Gene : Eucgr.F04150 E. grandis v2.0
Defline:  (1 of 2) PTHR12161:SF21 - REGULATOR OF VPS4 ACTIVITY IN THE MVB PATHWAY PROTEIN Genomic Order:  3695
Name:  ? Eucgr.F04150 Secondary Identifier:  ? PAC:32056290
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.F04150 0.5kb upstream 0.5kb upstream 5175 true Chr06: 52170988-52176162 Eucalyptus grandis
Eucgr.F04150 0.5kb upstream 0.5kb upstream 500 false Chr06: 52170988-52171487 Eucalyptus grandis
Eucgr.F04150 0.5kb downstream 0.5kb downstream 5175 true Chr06: 52171488-52176662 Eucalyptus grandis
Eucgr.F04150 0.5kb downstream 0.5kb downstream 500 false Chr06: 52176163-52176662 Eucalyptus grandis
Eucgr.F04150 1.0kb upstream 1.0kb upstream 5675 true Chr06: 52170488-52176162 Eucalyptus grandis
Eucgr.F04150 1.0kb upstream 1.0kb upstream 1000 false Chr06: 52170488-52171487 Eucalyptus grandis
Eucgr.F04150 1.0kb downstream 1.0kb downstream 5675 true Chr06: 52171488-52177162 Eucalyptus grandis
Eucgr.F04150 1.0kb downstream 1.0kb downstream 1000 false Chr06: 52176163-52177162 Eucalyptus grandis
Eucgr.F04150 2.0kb upstream 2.0kb upstream 6675 true Chr06: 52169488-52176162 Eucalyptus grandis
Eucgr.F04150 2.0kb upstream 2.0kb upstream 2000 false Chr06: 52169488-52171487 Eucalyptus grandis
Eucgr.F04150 2.0kb downstream 2.0kb downstream 6675 true Chr06: 52171488-52178162 Eucalyptus grandis
Eucgr.F04150 2.0kb downstream 2.0kb downstream 2000 false Chr06: 52176163-52178162 Eucalyptus grandis
Eucgr.F04150 5.0kb upstream 5.0kb upstream 9675 true Chr06: 52166488-52176162 Eucalyptus grandis
Eucgr.F04150 5.0kb upstream 5.0kb upstream 5000 false Chr06: 52166488-52171487 Eucalyptus grandis
Eucgr.F04150 5.0kb downstream 5.0kb downstream 9675 true Chr06: 52171488-52181162 Eucalyptus grandis
Eucgr.F04150 5.0kb downstream 5.0kb downstream 5000 false Chr06: 52176163-52181162 Eucalyptus grandis
Eucgr.F04150 10.0kb upstream 10.0kb upstream 14675 true Chr06: 52161488-52176162 Eucalyptus grandis
Eucgr.F04150 10.0kb upstream 10.0kb upstream 10000 false Chr06: 52161488-52171487 Eucalyptus grandis
Eucgr.F04150 10.0kb downstream 10.0kb downstream 14675 true Chr06: 52171488-52186162 Eucalyptus grandis
Eucgr.F04150 10.0kb downstream 10.0kb downstream 10000 false Chr06: 52176163-52186162 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124068076 5270 Rosid View MSA
123736868 5271 Pentapetalae View MSA
122789571 5272 Eudicot View MSA
122045314 5273 Angiosperm View MSA
121350449 5274 Embryophyte View MSA
123424640 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 53.5938 0.0 127.642 High  
cufflinks 94.5429 0.0 248.049 High  
cufflinks 66.3104 0.0 202.954 High  
cufflinks 109.365 0.0 333.902 High  
cufflinks 143.61 0.0 474.263 High High
cufflinks 26.0047 0.0 72.6674   Low

0 Strain