Gene : Eucgr.G01720 E. grandis v2.0
Defline:  (1 of 3) 2.5.1.21 - Squalene synthase / Squalene synthetase Genomic Order:  1325
Name:  ? Eucgr.G01720 Secondary Identifier:  ? PAC:32070201
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Egrandis PWY-2541 Eucalyptus grandis pathologic  
Egrandis PWY-5670 Eucalyptus grandis pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.G01720 0.5kb upstream 0.5kb upstream 8448 true Chr07: 32944049-32952496 Eucalyptus grandis
Eucgr.G01720 0.5kb upstream 0.5kb upstream 500 false Chr07: 32944049-32944548 Eucalyptus grandis
Eucgr.G01720 0.5kb downstream 0.5kb downstream 8448 true Chr07: 32944549-32952996 Eucalyptus grandis
Eucgr.G01720 0.5kb downstream 0.5kb downstream 500 false Chr07: 32952497-32952996 Eucalyptus grandis
Eucgr.G01720 1.0kb upstream 1.0kb upstream 8948 true Chr07: 32943549-32952496 Eucalyptus grandis
Eucgr.G01720 1.0kb upstream 1.0kb upstream 1000 false Chr07: 32943549-32944548 Eucalyptus grandis
Eucgr.G01720 1.0kb downstream 1.0kb downstream 8948 true Chr07: 32944549-32953496 Eucalyptus grandis
Eucgr.G01720 1.0kb downstream 1.0kb downstream 1000 false Chr07: 32952497-32953496 Eucalyptus grandis
Eucgr.G01720 2.0kb upstream 2.0kb upstream 9948 true Chr07: 32942549-32952496 Eucalyptus grandis
Eucgr.G01720 2.0kb upstream 2.0kb upstream 2000 false Chr07: 32942549-32944548 Eucalyptus grandis
Eucgr.G01720 2.0kb downstream 2.0kb downstream 9948 true Chr07: 32944549-32954496 Eucalyptus grandis
Eucgr.G01720 2.0kb downstream 2.0kb downstream 2000 false Chr07: 32952497-32954496 Eucalyptus grandis
Eucgr.G01720 5.0kb upstream 5.0kb upstream 12948 true Chr07: 32939549-32952496 Eucalyptus grandis
Eucgr.G01720 5.0kb upstream 5.0kb upstream 5000 false Chr07: 32939549-32944548 Eucalyptus grandis
Eucgr.G01720 5.0kb downstream 5.0kb downstream 12948 true Chr07: 32944549-32957496 Eucalyptus grandis
Eucgr.G01720 5.0kb downstream 5.0kb downstream 5000 false Chr07: 32952497-32957496 Eucalyptus grandis
Eucgr.G01720 10.0kb upstream 10.0kb upstream 17948 true Chr07: 32934549-32952496 Eucalyptus grandis
Eucgr.G01720 10.0kb upstream 10.0kb upstream 10000 false Chr07: 32934549-32944548 Eucalyptus grandis
Eucgr.G01720 10.0kb downstream 10.0kb downstream 17948 true Chr07: 32944549-32962496 Eucalyptus grandis
Eucgr.G01720 10.0kb downstream 10.0kb downstream 10000 false Chr07: 32952497-32962496 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124065005 5270 Rosid View MSA
123747848 5271 Pentapetalae View MSA
122787825 5272 Eudicot View MSA
122042609 5273 Angiosperm View MSA
121351426 5274 Embryophyte View MSA
123424778 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 175.389 0.0 491.336 High  
cufflinks 39.825 0.0 105.24    
cufflinks 164.032 0.0 457.97 High  
cufflinks 60.0688 0.0 158.971 High  
cufflinks 23.635 0.0 53.2809   Low
cufflinks 141.951 0.0 384.27 High  

0 Strain