Gene : Eucgr.G01349 E. grandis v2.0
Defline:  (1 of 2) PTHR11079:SF58 - RNA PSEUDOURIDINE SYNTHASE 4, MITOCHONDRIAL Genomic Order:  907
Name:  ? Eucgr.G01349 Secondary Identifier:  ? PAC:32072071
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.G01349 0.5kb upstream 0.5kb upstream 4843 true Chr07: 20956436-20961278 Eucalyptus grandis
Eucgr.G01349 0.5kb upstream 0.5kb upstream 500 false Chr07: 20956436-20956935 Eucalyptus grandis
Eucgr.G01349 0.5kb downstream 0.5kb downstream 4843 true Chr07: 20956936-20961778 Eucalyptus grandis
Eucgr.G01349 0.5kb downstream 0.5kb downstream 500 false Chr07: 20961279-20961778 Eucalyptus grandis
Eucgr.G01349 1.0kb upstream 1.0kb upstream 5343 true Chr07: 20955936-20961278 Eucalyptus grandis
Eucgr.G01349 1.0kb upstream 1.0kb upstream 1000 false Chr07: 20955936-20956935 Eucalyptus grandis
Eucgr.G01349 1.0kb downstream 1.0kb downstream 5343 true Chr07: 20956936-20962278 Eucalyptus grandis
Eucgr.G01349 1.0kb downstream 1.0kb downstream 1000 false Chr07: 20961279-20962278 Eucalyptus grandis
Eucgr.G01349 2.0kb upstream 2.0kb upstream 6343 true Chr07: 20954936-20961278 Eucalyptus grandis
Eucgr.G01349 2.0kb upstream 2.0kb upstream 2000 false Chr07: 20954936-20956935 Eucalyptus grandis
Eucgr.G01349 2.0kb downstream 2.0kb downstream 6343 true Chr07: 20956936-20963278 Eucalyptus grandis
Eucgr.G01349 2.0kb downstream 2.0kb downstream 2000 false Chr07: 20961279-20963278 Eucalyptus grandis
Eucgr.G01349 5.0kb upstream 5.0kb upstream 9343 true Chr07: 20951936-20961278 Eucalyptus grandis
Eucgr.G01349 5.0kb upstream 5.0kb upstream 5000 false Chr07: 20951936-20956935 Eucalyptus grandis
Eucgr.G01349 5.0kb downstream 5.0kb downstream 9343 true Chr07: 20956936-20966278 Eucalyptus grandis
Eucgr.G01349 5.0kb downstream 5.0kb downstream 5000 false Chr07: 20961279-20966278 Eucalyptus grandis
Eucgr.G01349 10.0kb upstream 10.0kb upstream 14343 true Chr07: 20946936-20961278 Eucalyptus grandis
Eucgr.G01349 10.0kb upstream 10.0kb upstream 10000 false Chr07: 20946936-20956935 Eucalyptus grandis
Eucgr.G01349 10.0kb downstream 10.0kb downstream 14343 true Chr07: 20956936-20971278 Eucalyptus grandis
Eucgr.G01349 10.0kb downstream 10.0kb downstream 10000 false Chr07: 20961279-20971278 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124062896 5270 Rosid View MSA
123739402 5271 Pentapetalae View MSA
122789155 5272 Eudicot View MSA
122044884 5273 Angiosperm View MSA
121348863 5274 Embryophyte View MSA
123426669 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.709193 0.0 2.0751    
cufflinks 0.604244 0.0 1.79038 Low  
cufflinks 1.15216 0.0 3.18963    
cufflinks 0.218052 0.0 0.731024 Low Low
cufflinks 0.832017 0.0 2.38765    
cufflinks 3.26535 0.0 8.21255   High

0 Strain