Gene : Eucgr.G02199 E. grandis v2.0
Defline:  (1 of 53) PF01535//PF13041//PF13812 - PPR repeat (PPR) // PPR repeat family (PPR_2) // Pentatricopeptide repeat domain (PPR_3) Genomic Order:  1763
Name:  ? Eucgr.G02199 Secondary Identifier:  ? PAC:32071763
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.G02199 0.5kb upstream 0.5kb upstream 2087 true Chr07: 42109079-42111165 Eucalyptus grandis
Eucgr.G02199 0.5kb upstream 0.5kb upstream 500 false Chr07: 42110666-42111165 Eucalyptus grandis
Eucgr.G02199 0.5kb downstream 0.5kb downstream 2087 true Chr07: 42108579-42110665 Eucalyptus grandis
Eucgr.G02199 0.5kb downstream 0.5kb downstream 500 false Chr07: 42108579-42109078 Eucalyptus grandis
Eucgr.G02199 1.0kb upstream 1.0kb upstream 2587 true Chr07: 42109079-42111665 Eucalyptus grandis
Eucgr.G02199 1.0kb upstream 1.0kb upstream 1000 false Chr07: 42110666-42111665 Eucalyptus grandis
Eucgr.G02199 1.0kb downstream 1.0kb downstream 2587 true Chr07: 42108079-42110665 Eucalyptus grandis
Eucgr.G02199 1.0kb downstream 1.0kb downstream 1000 false Chr07: 42108079-42109078 Eucalyptus grandis
Eucgr.G02199 2.0kb upstream 2.0kb upstream 3587 true Chr07: 42109079-42112665 Eucalyptus grandis
Eucgr.G02199 2.0kb upstream 2.0kb upstream 2000 false Chr07: 42110666-42112665 Eucalyptus grandis
Eucgr.G02199 2.0kb downstream 2.0kb downstream 3587 true Chr07: 42107079-42110665 Eucalyptus grandis
Eucgr.G02199 2.0kb downstream 2.0kb downstream 2000 false Chr07: 42107079-42109078 Eucalyptus grandis
Eucgr.G02199 5.0kb upstream 5.0kb upstream 6587 true Chr07: 42109079-42115665 Eucalyptus grandis
Eucgr.G02199 5.0kb upstream 5.0kb upstream 5000 false Chr07: 42110666-42115665 Eucalyptus grandis
Eucgr.G02199 5.0kb downstream 5.0kb downstream 6587 true Chr07: 42104079-42110665 Eucalyptus grandis
Eucgr.G02199 5.0kb downstream 5.0kb downstream 5000 false Chr07: 42104079-42109078 Eucalyptus grandis
Eucgr.G02199 10.0kb upstream 10.0kb upstream 11587 true Chr07: 42109079-42120665 Eucalyptus grandis
Eucgr.G02199 10.0kb upstream 10.0kb upstream 10000 false Chr07: 42110666-42120665 Eucalyptus grandis
Eucgr.G02199 10.0kb downstream 10.0kb downstream 11587 true Chr07: 42099079-42110665 Eucalyptus grandis
Eucgr.G02199 10.0kb downstream 10.0kb downstream 10000 false Chr07: 42099079-42109078 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124063313 5270 Rosid View MSA
123738652 5271 Pentapetalae View MSA
122793005 5272 Eudicot View MSA
122045173 5273 Angiosperm View MSA
121310410 5274 Embryophyte View MSA
123347900 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.84734 0.0 5.01222   High
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.835109 0.0 2.45976    
cufflinks 1.21021 0.0 3.41748    
cufflinks 1.15705 0.0 3.30812    
cufflinks 0.816395 0.0 2.41374 Low  

0 Strain