Gene : Eucgr.G01977 E. grandis v2.0
Defline:  (1 of 1) PTHR11062:SF105 - BETA-1,4-XYLOSYLTRANSFERASE IRX10-RELATED Genomic Order:  1574
Name:  ? Eucgr.G01977 Secondary Identifier:  ? PAC:32071905
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Egrandis PWY-5980 Eucalyptus grandis pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.G01977 0.5kb upstream 0.5kb upstream 3797 true Chr07: 38189903-38193699 Eucalyptus grandis
Eucgr.G01977 0.5kb upstream 0.5kb upstream 500 false Chr07: 38189903-38190402 Eucalyptus grandis
Eucgr.G01977 0.5kb downstream 0.5kb downstream 3797 true Chr07: 38190403-38194199 Eucalyptus grandis
Eucgr.G01977 0.5kb downstream 0.5kb downstream 500 false Chr07: 38193700-38194199 Eucalyptus grandis
Eucgr.G01977 1.0kb upstream 1.0kb upstream 4297 true Chr07: 38189403-38193699 Eucalyptus grandis
Eucgr.G01977 1.0kb upstream 1.0kb upstream 1000 false Chr07: 38189403-38190402 Eucalyptus grandis
Eucgr.G01977 1.0kb downstream 1.0kb downstream 4297 true Chr07: 38190403-38194699 Eucalyptus grandis
Eucgr.G01977 1.0kb downstream 1.0kb downstream 1000 false Chr07: 38193700-38194699 Eucalyptus grandis
Eucgr.G01977 2.0kb upstream 2.0kb upstream 5297 true Chr07: 38188403-38193699 Eucalyptus grandis
Eucgr.G01977 2.0kb upstream 2.0kb upstream 2000 false Chr07: 38188403-38190402 Eucalyptus grandis
Eucgr.G01977 2.0kb downstream 2.0kb downstream 5297 true Chr07: 38190403-38195699 Eucalyptus grandis
Eucgr.G01977 2.0kb downstream 2.0kb downstream 2000 false Chr07: 38193700-38195699 Eucalyptus grandis
Eucgr.G01977 5.0kb upstream 5.0kb upstream 8297 true Chr07: 38185403-38193699 Eucalyptus grandis
Eucgr.G01977 5.0kb upstream 5.0kb upstream 5000 false Chr07: 38185403-38190402 Eucalyptus grandis
Eucgr.G01977 5.0kb downstream 5.0kb downstream 8297 true Chr07: 38190403-38198699 Eucalyptus grandis
Eucgr.G01977 5.0kb downstream 5.0kb downstream 5000 false Chr07: 38193700-38198699 Eucalyptus grandis
Eucgr.G01977 10.0kb upstream 10.0kb upstream 13297 true Chr07: 38180403-38193699 Eucalyptus grandis
Eucgr.G01977 10.0kb upstream 10.0kb upstream 10000 false Chr07: 38180403-38190402 Eucalyptus grandis
Eucgr.G01977 10.0kb downstream 10.0kb downstream 13297 true Chr07: 38190403-38203699 Eucalyptus grandis
Eucgr.G01977 10.0kb downstream 10.0kb downstream 10000 false Chr07: 38193700-38203699 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124072304 5270 Rosid View MSA
123741163 5271 Pentapetalae View MSA
122792713 5272 Eudicot View MSA
122045479 5273 Angiosperm View MSA
121345748 5274 Embryophyte View MSA
123428712 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.15917 0.0 8.09962    
cufflinks 503.923 0.0 1431.82 High High
cufflinks 1.83764 0.0 4.97791   Low
cufflinks 488.631 0.0 1370.99 High High
cufflinks 30.9843 0.0 68.5239    
cufflinks 10.8111 0.0 24.7107    

0 Strain