Gene : Eucgr.G01896 E. grandis v2.0
Defline:  (1 of 235) PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Genomic Order:  1178
Name:  ? Eucgr.G01896 Secondary Identifier:  ? PAC:32070882
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.G01896 0.5kb upstream 0.5kb upstream 3386 true Chr07: 28628890-28632275 Eucalyptus grandis
Eucgr.G01896 0.5kb upstream 0.5kb upstream 500 false Chr07: 28631776-28632275 Eucalyptus grandis
Eucgr.G01896 0.5kb downstream 0.5kb downstream 3386 true Chr07: 28628390-28631775 Eucalyptus grandis
Eucgr.G01896 0.5kb downstream 0.5kb downstream 500 false Chr07: 28628390-28628889 Eucalyptus grandis
Eucgr.G01896 1.0kb upstream 1.0kb upstream 3886 true Chr07: 28628890-28632775 Eucalyptus grandis
Eucgr.G01896 1.0kb upstream 1.0kb upstream 1000 false Chr07: 28631776-28632775 Eucalyptus grandis
Eucgr.G01896 1.0kb downstream 1.0kb downstream 3886 true Chr07: 28627890-28631775 Eucalyptus grandis
Eucgr.G01896 1.0kb downstream 1.0kb downstream 1000 false Chr07: 28627890-28628889 Eucalyptus grandis
Eucgr.G01896 2.0kb upstream 2.0kb upstream 4886 true Chr07: 28628890-28633775 Eucalyptus grandis
Eucgr.G01896 2.0kb upstream 2.0kb upstream 2000 false Chr07: 28631776-28633775 Eucalyptus grandis
Eucgr.G01896 2.0kb downstream 2.0kb downstream 4886 true Chr07: 28626890-28631775 Eucalyptus grandis
Eucgr.G01896 2.0kb downstream 2.0kb downstream 2000 false Chr07: 28626890-28628889 Eucalyptus grandis
Eucgr.G01896 5.0kb upstream 5.0kb upstream 7886 true Chr07: 28628890-28636775 Eucalyptus grandis
Eucgr.G01896 5.0kb upstream 5.0kb upstream 5000 false Chr07: 28631776-28636775 Eucalyptus grandis
Eucgr.G01896 5.0kb downstream 5.0kb downstream 7886 true Chr07: 28623890-28631775 Eucalyptus grandis
Eucgr.G01896 5.0kb downstream 5.0kb downstream 5000 false Chr07: 28623890-28628889 Eucalyptus grandis
Eucgr.G01896 10.0kb upstream 10.0kb upstream 12886 true Chr07: 28628890-28641775 Eucalyptus grandis
Eucgr.G01896 10.0kb upstream 10.0kb upstream 10000 false Chr07: 28631776-28641775 Eucalyptus grandis
Eucgr.G01896 10.0kb downstream 10.0kb downstream 12886 true Chr07: 28618890-28631775 Eucalyptus grandis
Eucgr.G01896 10.0kb downstream 10.0kb downstream 10000 false Chr07: 28618890-28628889 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124063386 5270 Rosid View MSA
123751448 5271 Pentapetalae View MSA
122786309 5272 Eudicot View MSA
122045873 5273 Angiosperm View MSA
121310522 5274 Embryophyte View MSA
123347983 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.348037 0.0 1.06977 Low  
cufflinks 0.656976 0.0 1.86565 Low  
cufflinks 0.650557 0.0 1.85279    
cufflinks 0.759911 0.0 2.11732    
cufflinks 1.57346 0.0 4.10572   High
cufflinks 0.263255 0.0 0.846646 Low Low

0 Strain