Gene : Eucgr.G02342 E. grandis v2.0
Defline:  (1 of 7) PTHR12608 - TRANSMEMBRANE PROTEIN HTP-1 RELATED Genomic Order:  1876
Name:  ? Eucgr.G02342 Secondary Identifier:  ? PAC:32072162
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.G02342 0.5kb upstream 0.5kb upstream 6114 true Chr07: 44086927-44093040 Eucalyptus grandis
Eucgr.G02342 0.5kb upstream 0.5kb upstream 500 false Chr07: 44086927-44087426 Eucalyptus grandis
Eucgr.G02342 0.5kb downstream 0.5kb downstream 6114 true Chr07: 44087427-44093540 Eucalyptus grandis
Eucgr.G02342 0.5kb downstream 0.5kb downstream 500 false Chr07: 44093041-44093540 Eucalyptus grandis
Eucgr.G02342 1.0kb upstream 1.0kb upstream 6614 true Chr07: 44086427-44093040 Eucalyptus grandis
Eucgr.G02342 1.0kb upstream 1.0kb upstream 1000 false Chr07: 44086427-44087426 Eucalyptus grandis
Eucgr.G02342 1.0kb downstream 1.0kb downstream 6614 true Chr07: 44087427-44094040 Eucalyptus grandis
Eucgr.G02342 1.0kb downstream 1.0kb downstream 1000 false Chr07: 44093041-44094040 Eucalyptus grandis
Eucgr.G02342 2.0kb upstream 2.0kb upstream 7614 true Chr07: 44085427-44093040 Eucalyptus grandis
Eucgr.G02342 2.0kb upstream 2.0kb upstream 2000 false Chr07: 44085427-44087426 Eucalyptus grandis
Eucgr.G02342 2.0kb downstream 2.0kb downstream 7614 true Chr07: 44087427-44095040 Eucalyptus grandis
Eucgr.G02342 2.0kb downstream 2.0kb downstream 2000 false Chr07: 44093041-44095040 Eucalyptus grandis
Eucgr.G02342 5.0kb upstream 5.0kb upstream 10614 true Chr07: 44082427-44093040 Eucalyptus grandis
Eucgr.G02342 5.0kb upstream 5.0kb upstream 5000 false Chr07: 44082427-44087426 Eucalyptus grandis
Eucgr.G02342 5.0kb downstream 5.0kb downstream 10614 true Chr07: 44087427-44098040 Eucalyptus grandis
Eucgr.G02342 5.0kb downstream 5.0kb downstream 5000 false Chr07: 44093041-44098040 Eucalyptus grandis
Eucgr.G02342 10.0kb upstream 10.0kb upstream 15614 true Chr07: 44077427-44093040 Eucalyptus grandis
Eucgr.G02342 10.0kb upstream 10.0kb upstream 10000 false Chr07: 44077427-44087426 Eucalyptus grandis
Eucgr.G02342 10.0kb downstream 10.0kb downstream 15614 true Chr07: 44087427-44103040 Eucalyptus grandis
Eucgr.G02342 10.0kb downstream 10.0kb downstream 10000 false Chr07: 44093041-44103040 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124060465 5270 Rosid View MSA
123745262 5271 Pentapetalae View MSA
122786171 5272 Eudicot View MSA
122046225 5273 Angiosperm View MSA
121344721 5274 Embryophyte View MSA
123428725 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.86535 0.0 5.92333    
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 4.10941 0.0 11.2858   High
cufflinks 0.871554 0.0 3.11498   Low
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 1.97618 0.0 6.21778    

0 Strain