Gene : Eucgr.G02824 E. grandis v2.0
Defline:  (1 of 2) 4.2.3.5 - Chorismate synthase / 5-enolpyruvylshikimate-3-phosphate phospholyase Genomic Order:  2317
Name:  ? Eucgr.G02824 Secondary Identifier:  ? PAC:32071681
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Egrandis ARO-PWY Eucalyptus grandis pathologic  
Egrandis PWY-6163 Eucalyptus grandis pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.G02824 0.5kb upstream 0.5kb upstream 7350 true Chr07: 48930411-48937760 Eucalyptus grandis
Eucgr.G02824 0.5kb upstream 0.5kb upstream 500 false Chr07: 48937261-48937760 Eucalyptus grandis
Eucgr.G02824 0.5kb downstream 0.5kb downstream 7350 true Chr07: 48929911-48937260 Eucalyptus grandis
Eucgr.G02824 0.5kb downstream 0.5kb downstream 500 false Chr07: 48929911-48930410 Eucalyptus grandis
Eucgr.G02824 1.0kb upstream 1.0kb upstream 7850 true Chr07: 48930411-48938260 Eucalyptus grandis
Eucgr.G02824 1.0kb upstream 1.0kb upstream 1000 false Chr07: 48937261-48938260 Eucalyptus grandis
Eucgr.G02824 1.0kb downstream 1.0kb downstream 7850 true Chr07: 48929411-48937260 Eucalyptus grandis
Eucgr.G02824 1.0kb downstream 1.0kb downstream 1000 false Chr07: 48929411-48930410 Eucalyptus grandis
Eucgr.G02824 2.0kb upstream 2.0kb upstream 8850 true Chr07: 48930411-48939260 Eucalyptus grandis
Eucgr.G02824 2.0kb upstream 2.0kb upstream 2000 false Chr07: 48937261-48939260 Eucalyptus grandis
Eucgr.G02824 2.0kb downstream 2.0kb downstream 8850 true Chr07: 48928411-48937260 Eucalyptus grandis
Eucgr.G02824 2.0kb downstream 2.0kb downstream 2000 false Chr07: 48928411-48930410 Eucalyptus grandis
Eucgr.G02824 5.0kb upstream 5.0kb upstream 11850 true Chr07: 48930411-48942260 Eucalyptus grandis
Eucgr.G02824 5.0kb upstream 5.0kb upstream 5000 false Chr07: 48937261-48942260 Eucalyptus grandis
Eucgr.G02824 5.0kb downstream 5.0kb downstream 11850 true Chr07: 48925411-48937260 Eucalyptus grandis
Eucgr.G02824 5.0kb downstream 5.0kb downstream 5000 false Chr07: 48925411-48930410 Eucalyptus grandis
Eucgr.G02824 10.0kb upstream 10.0kb upstream 16850 true Chr07: 48930411-48947260 Eucalyptus grandis
Eucgr.G02824 10.0kb upstream 10.0kb upstream 10000 false Chr07: 48937261-48947260 Eucalyptus grandis
Eucgr.G02824 10.0kb downstream 10.0kb downstream 16850 true Chr07: 48920411-48937260 Eucalyptus grandis
Eucgr.G02824 10.0kb downstream 10.0kb downstream 10000 false Chr07: 48920411-48930410 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041230 5273 Angiosperm View MSA
124061876 5270 Rosid View MSA
123747909 5271 Pentapetalae View MSA
122787011 5272 Eudicot View MSA
121346403 5274 Embryophyte View MSA
123428194 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 44.4929 0.0 102.638 High  
cufflinks 257.649 0.0 813.29 High High
cufflinks 40.5265 0.0 93.1556 High  
cufflinks 243.676 0.0 774.57 High High
cufflinks 73.1248 0.0 166.554 High  
cufflinks 54.6013 0.0 128.075 High  

0 Strain