Gene : Eucgr.G03028 E. grandis v2.0
Defline:  (1 of 2) PTHR11709:SF103 - LACCASE-16 Genomic Order:  2500
Name:  ? Eucgr.G03028 Secondary Identifier:  ? PAC:32071401
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Egrandis PWY-5466 Eucalyptus grandis pathologic  
Egrandis PWY-6824 Eucalyptus grandis pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.G03028 0.5kb upstream 0.5kb upstream 4300 true Chr07: 51504433-51508732 Eucalyptus grandis
Eucgr.G03028 0.5kb upstream 0.5kb upstream 500 false Chr07: 51504433-51504932 Eucalyptus grandis
Eucgr.G03028 0.5kb downstream 0.5kb downstream 4300 true Chr07: 51504933-51509232 Eucalyptus grandis
Eucgr.G03028 0.5kb downstream 0.5kb downstream 500 false Chr07: 51508733-51509232 Eucalyptus grandis
Eucgr.G03028 1.0kb upstream 1.0kb upstream 4800 true Chr07: 51503933-51508732 Eucalyptus grandis
Eucgr.G03028 1.0kb upstream 1.0kb upstream 1000 false Chr07: 51503933-51504932 Eucalyptus grandis
Eucgr.G03028 1.0kb downstream 1.0kb downstream 4800 true Chr07: 51504933-51509732 Eucalyptus grandis
Eucgr.G03028 1.0kb downstream 1.0kb downstream 1000 false Chr07: 51508733-51509732 Eucalyptus grandis
Eucgr.G03028 2.0kb upstream 2.0kb upstream 5800 true Chr07: 51502933-51508732 Eucalyptus grandis
Eucgr.G03028 2.0kb upstream 2.0kb upstream 2000 false Chr07: 51502933-51504932 Eucalyptus grandis
Eucgr.G03028 2.0kb downstream 2.0kb downstream 5800 true Chr07: 51504933-51510732 Eucalyptus grandis
Eucgr.G03028 2.0kb downstream 2.0kb downstream 2000 false Chr07: 51508733-51510732 Eucalyptus grandis
Eucgr.G03028 5.0kb upstream 5.0kb upstream 8800 true Chr07: 51499933-51508732 Eucalyptus grandis
Eucgr.G03028 5.0kb upstream 5.0kb upstream 5000 false Chr07: 51499933-51504932 Eucalyptus grandis
Eucgr.G03028 5.0kb downstream 5.0kb downstream 8800 true Chr07: 51504933-51513732 Eucalyptus grandis
Eucgr.G03028 5.0kb downstream 5.0kb downstream 5000 false Chr07: 51508733-51513732 Eucalyptus grandis
Eucgr.G03028 10.0kb upstream 10.0kb upstream 13800 true Chr07: 51494933-51508732 Eucalyptus grandis
Eucgr.G03028 10.0kb upstream 10.0kb upstream 10000 false Chr07: 51494933-51504932 Eucalyptus grandis
Eucgr.G03028 10.0kb downstream 10.0kb downstream 13800 true Chr07: 51504933-51518732 Eucalyptus grandis
Eucgr.G03028 10.0kb downstream 10.0kb downstream 10000 false Chr07: 51508733-51518732 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121779717 5273 Angiosperm View MSA
124070050 5270 Rosid View MSA
123743966 5271 Pentapetalae View MSA
122770838 5272 Eudicot View MSA
121051361 5274 Embryophyte View MSA
123428014 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 26.1307 0.0 57.8022    
cufflinks 0.102909 0.0 0.385757 Low Low
cufflinks 42.1688 0.0 94.0995 High  
cufflinks 13.1285 0.0 29.3392    
cufflinks 12.5601 0.0 28.1157    

0 Strain