Gene : Eucgr.H00136 E. grandis v2.0
Defline:  (1 of 5) KOG4205 - RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 Genomic Order:  366
Name:  ? Eucgr.H00136 Secondary Identifier:  ? PAC:32044641
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.H00136 0.5kb upstream 0.5kb upstream 3602 true Chr08: 5045318-5048919 Eucalyptus grandis
Eucgr.H00136 0.5kb upstream 0.5kb upstream 500 false Chr08: 5045318-5045817 Eucalyptus grandis
Eucgr.H00136 0.5kb downstream 0.5kb downstream 3602 true Chr08: 5045818-5049419 Eucalyptus grandis
Eucgr.H00136 0.5kb downstream 0.5kb downstream 500 false Chr08: 5048920-5049419 Eucalyptus grandis
Eucgr.H00136 1.0kb upstream 1.0kb upstream 4102 true Chr08: 5044818-5048919 Eucalyptus grandis
Eucgr.H00136 1.0kb upstream 1.0kb upstream 1000 false Chr08: 5044818-5045817 Eucalyptus grandis
Eucgr.H00136 1.0kb downstream 1.0kb downstream 4102 true Chr08: 5045818-5049919 Eucalyptus grandis
Eucgr.H00136 1.0kb downstream 1.0kb downstream 1000 false Chr08: 5048920-5049919 Eucalyptus grandis
Eucgr.H00136 2.0kb upstream 2.0kb upstream 5102 true Chr08: 5043818-5048919 Eucalyptus grandis
Eucgr.H00136 2.0kb upstream 2.0kb upstream 2000 false Chr08: 5043818-5045817 Eucalyptus grandis
Eucgr.H00136 2.0kb downstream 2.0kb downstream 5102 true Chr08: 5045818-5050919 Eucalyptus grandis
Eucgr.H00136 2.0kb downstream 2.0kb downstream 2000 false Chr08: 5048920-5050919 Eucalyptus grandis
Eucgr.H00136 5.0kb upstream 5.0kb upstream 8102 true Chr08: 5040818-5048919 Eucalyptus grandis
Eucgr.H00136 5.0kb upstream 5.0kb upstream 5000 false Chr08: 5040818-5045817 Eucalyptus grandis
Eucgr.H00136 5.0kb downstream 5.0kb downstream 8102 true Chr08: 5045818-5053919 Eucalyptus grandis
Eucgr.H00136 5.0kb downstream 5.0kb downstream 5000 false Chr08: 5048920-5053919 Eucalyptus grandis
Eucgr.H00136 10.0kb upstream 10.0kb upstream 13102 true Chr08: 5035818-5048919 Eucalyptus grandis
Eucgr.H00136 10.0kb upstream 10.0kb upstream 10000 false Chr08: 5035818-5045817 Eucalyptus grandis
Eucgr.H00136 10.0kb downstream 10.0kb downstream 13102 true Chr08: 5045818-5058919 Eucalyptus grandis
Eucgr.H00136 10.0kb downstream 10.0kb downstream 10000 false Chr08: 5048920-5058919 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124062426 5270 Rosid View MSA
123739967 5271 Pentapetalae View MSA
122796088 5272 Eudicot View MSA
122043625 5273 Angiosperm View MSA
123429142 5275 Viridiplantae View MSA
121349165 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 54.6083 0.0 121.606 High High
cufflinks 30.3692 0.0 67.1744   Low
cufflinks 50.045 0.0 111.239 High  
cufflinks 44.4235 0.0 98.5964 High  
cufflinks 32.4458 0.0 71.7531   Low
cufflinks 39.9275 0.0 88.3872 High  

0 Strain