Gene : Eucgr.H00043 E. grandis v2.0
Defline:  (1 of 1) PTHR11946:SF86 - METHIONINE--TRNA LIGASE, CYTOPLASMIC Genomic Order:  281
Name:  ? Eucgr.H00043 Secondary Identifier:  ? PAC:32044259
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Egrandis TRNA-CHARGING-PWY Eucalyptus grandis pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.H00043 0.5kb upstream 0.5kb upstream 11616 true Chr08: 4195901-4207516 Eucalyptus grandis
Eucgr.H00043 0.5kb upstream 0.5kb upstream 500 false Chr08: 4195901-4196400 Eucalyptus grandis
Eucgr.H00043 0.5kb downstream 0.5kb downstream 11616 true Chr08: 4196401-4208016 Eucalyptus grandis
Eucgr.H00043 0.5kb downstream 0.5kb downstream 500 false Chr08: 4207517-4208016 Eucalyptus grandis
Eucgr.H00043 1.0kb upstream 1.0kb upstream 12116 true Chr08: 4195401-4207516 Eucalyptus grandis
Eucgr.H00043 1.0kb upstream 1.0kb upstream 1000 false Chr08: 4195401-4196400 Eucalyptus grandis
Eucgr.H00043 1.0kb downstream 1.0kb downstream 12116 true Chr08: 4196401-4208516 Eucalyptus grandis
Eucgr.H00043 1.0kb downstream 1.0kb downstream 1000 false Chr08: 4207517-4208516 Eucalyptus grandis
Eucgr.H00043 2.0kb upstream 2.0kb upstream 13116 true Chr08: 4194401-4207516 Eucalyptus grandis
Eucgr.H00043 2.0kb upstream 2.0kb upstream 2000 false Chr08: 4194401-4196400 Eucalyptus grandis
Eucgr.H00043 2.0kb downstream 2.0kb downstream 13116 true Chr08: 4196401-4209516 Eucalyptus grandis
Eucgr.H00043 2.0kb downstream 2.0kb downstream 2000 false Chr08: 4207517-4209516 Eucalyptus grandis
Eucgr.H00043 5.0kb upstream 5.0kb upstream 16116 true Chr08: 4191401-4207516 Eucalyptus grandis
Eucgr.H00043 5.0kb upstream 5.0kb upstream 5000 false Chr08: 4191401-4196400 Eucalyptus grandis
Eucgr.H00043 5.0kb downstream 5.0kb downstream 16116 true Chr08: 4196401-4212516 Eucalyptus grandis
Eucgr.H00043 5.0kb downstream 5.0kb downstream 5000 false Chr08: 4207517-4212516 Eucalyptus grandis
Eucgr.H00043 10.0kb upstream 10.0kb upstream 21116 true Chr08: 4186401-4207516 Eucalyptus grandis
Eucgr.H00043 10.0kb upstream 10.0kb upstream 10000 false Chr08: 4186401-4196400 Eucalyptus grandis
Eucgr.H00043 10.0kb downstream 10.0kb downstream 21116 true Chr08: 4196401-4217516 Eucalyptus grandis
Eucgr.H00043 10.0kb downstream 10.0kb downstream 10000 false Chr08: 4207517-4217516 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124066402 5270 Rosid View MSA
123739463 5271 Pentapetalae View MSA
122793532 5272 Eudicot View MSA
122041539 5273 Angiosperm View MSA
121348816 5274 Embryophyte View MSA
123428788 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 17.1569 0.0 38.9712    
cufflinks 19.3542 0.0 44.3843    
cufflinks 16.4 0.0 37.2048   Low
cufflinks 18.4688 0.0 51.624    
cufflinks 18.7156 0.0 42.8077    
cufflinks 21.5681 0.0 54.9467   High

0 Strain