Gene : Eucgr.G03409 E. grandis v2.0
Defline:  (1 of 1) PTHR37173:SF1 - HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN Genomic Order:  2845
Name:  ? Eucgr.G03409 Secondary Identifier:  ? PAC:32071645
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.G03409 0.5kb upstream 0.5kb upstream 4900 true Chr07: 54617539-54622438 Eucalyptus grandis
Eucgr.G03409 0.5kb upstream 0.5kb upstream 500 false Chr07: 54617539-54618038 Eucalyptus grandis
Eucgr.G03409 0.5kb downstream 0.5kb downstream 4900 true Chr07: 54618039-54622938 Eucalyptus grandis
Eucgr.G03409 0.5kb downstream 0.5kb downstream 500 false Chr07: 54622439-54622938 Eucalyptus grandis
Eucgr.G03409 1.0kb upstream 1.0kb upstream 5400 true Chr07: 54617039-54622438 Eucalyptus grandis
Eucgr.G03409 1.0kb upstream 1.0kb upstream 1000 false Chr07: 54617039-54618038 Eucalyptus grandis
Eucgr.G03409 1.0kb downstream 1.0kb downstream 5400 true Chr07: 54618039-54623438 Eucalyptus grandis
Eucgr.G03409 1.0kb downstream 1.0kb downstream 1000 false Chr07: 54622439-54623438 Eucalyptus grandis
Eucgr.G03409 2.0kb upstream 2.0kb upstream 6400 true Chr07: 54616039-54622438 Eucalyptus grandis
Eucgr.G03409 2.0kb upstream 2.0kb upstream 2000 false Chr07: 54616039-54618038 Eucalyptus grandis
Eucgr.G03409 2.0kb downstream 2.0kb downstream 6400 true Chr07: 54618039-54624438 Eucalyptus grandis
Eucgr.G03409 2.0kb downstream 2.0kb downstream 2000 false Chr07: 54622439-54624438 Eucalyptus grandis
Eucgr.G03409 5.0kb upstream 5.0kb upstream 9400 true Chr07: 54613039-54622438 Eucalyptus grandis
Eucgr.G03409 5.0kb upstream 5.0kb upstream 5000 false Chr07: 54613039-54618038 Eucalyptus grandis
Eucgr.G03409 5.0kb downstream 5.0kb downstream 9400 true Chr07: 54618039-54627438 Eucalyptus grandis
Eucgr.G03409 5.0kb downstream 5.0kb downstream 5000 false Chr07: 54622439-54627438 Eucalyptus grandis
Eucgr.G03409 10.0kb upstream 10.0kb upstream 14400 true Chr07: 54608039-54622438 Eucalyptus grandis
Eucgr.G03409 10.0kb upstream 10.0kb upstream 10000 false Chr07: 54608039-54618038 Eucalyptus grandis
Eucgr.G03409 10.0kb downstream 10.0kb downstream 14400 true Chr07: 54618039-54632438 Eucalyptus grandis
Eucgr.G03409 10.0kb downstream 10.0kb downstream 10000 false Chr07: 54622439-54632438 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124065426 5270 Rosid View MSA
123746195 5271 Pentapetalae View MSA
122787235 5272 Eudicot View MSA
122045095 5273 Angiosperm View MSA
121345714 5274 Embryophyte View MSA
123425917 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.86804 0.0 22.8867    
cufflinks 13.4516 0.0 31.8963   High
cufflinks 6.82314 0.0 17.6988    
cufflinks 8.09921 0.0 20.4252    
cufflinks 5.24173 0.0 14.2975    
cufflinks 1.48825 0.0 5.13296   Low

0 Strain