Gene : Eucgr.G03412 E. grandis v2.0
Defline:  (1 of 2) 2.3.3.1 - Citrate (Si)-synthase / Citrate oxaloacetate-lyase ((pro-3S)-CH(2)COO->acetyl-CoA) Genomic Order:  2848
Name:  ? Eucgr.G03412 Secondary Identifier:  ? PAC:32070533
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

5 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Egrandis GLYOXYLATE-BYPASS Eucalyptus grandis pathologic  
Egrandis PWY-5464 Eucalyptus grandis pathologic  
Egrandis PWY-561 Eucalyptus grandis pathologic  
Egrandis PWY-5690 Eucalyptus grandis pathologic  
Egrandis PWY-6549 Eucalyptus grandis pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.G03412 0.5kb upstream 0.5kb upstream 11902 true Chr07: 54631859-54643760 Eucalyptus grandis
Eucgr.G03412 0.5kb upstream 0.5kb upstream 500 false Chr07: 54643261-54643760 Eucalyptus grandis
Eucgr.G03412 0.5kb downstream 0.5kb downstream 11902 true Chr07: 54631359-54643260 Eucalyptus grandis
Eucgr.G03412 0.5kb downstream 0.5kb downstream 500 false Chr07: 54631359-54631858 Eucalyptus grandis
Eucgr.G03412 1.0kb upstream 1.0kb upstream 12402 true Chr07: 54631859-54644260 Eucalyptus grandis
Eucgr.G03412 1.0kb upstream 1.0kb upstream 1000 false Chr07: 54643261-54644260 Eucalyptus grandis
Eucgr.G03412 1.0kb downstream 1.0kb downstream 12402 true Chr07: 54630859-54643260 Eucalyptus grandis
Eucgr.G03412 1.0kb downstream 1.0kb downstream 1000 false Chr07: 54630859-54631858 Eucalyptus grandis
Eucgr.G03412 2.0kb upstream 2.0kb upstream 13402 true Chr07: 54631859-54645260 Eucalyptus grandis
Eucgr.G03412 2.0kb upstream 2.0kb upstream 2000 false Chr07: 54643261-54645260 Eucalyptus grandis
Eucgr.G03412 2.0kb downstream 2.0kb downstream 13402 true Chr07: 54629859-54643260 Eucalyptus grandis
Eucgr.G03412 2.0kb downstream 2.0kb downstream 2000 false Chr07: 54629859-54631858 Eucalyptus grandis
Eucgr.G03412 5.0kb upstream 5.0kb upstream 16402 true Chr07: 54631859-54648260 Eucalyptus grandis
Eucgr.G03412 5.0kb upstream 5.0kb upstream 5000 false Chr07: 54643261-54648260 Eucalyptus grandis
Eucgr.G03412 5.0kb downstream 5.0kb downstream 16402 true Chr07: 54626859-54643260 Eucalyptus grandis
Eucgr.G03412 5.0kb downstream 5.0kb downstream 5000 false Chr07: 54626859-54631858 Eucalyptus grandis
Eucgr.G03412 10.0kb upstream 10.0kb upstream 21402 true Chr07: 54631859-54653260 Eucalyptus grandis
Eucgr.G03412 10.0kb upstream 10.0kb upstream 10000 false Chr07: 54643261-54653260 Eucalyptus grandis
Eucgr.G03412 10.0kb downstream 10.0kb downstream 21402 true Chr07: 54621859-54643260 Eucalyptus grandis
Eucgr.G03412 10.0kb downstream 10.0kb downstream 10000 false Chr07: 54621859-54631858 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041314 5273 Angiosperm View MSA
124068700 5270 Rosid View MSA
123737684 5271 Pentapetalae View MSA
122792616 5272 Eudicot View MSA
121345226 5274 Embryophyte View MSA
123424186 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 40.3381 0.0 89.8493 High  
cufflinks 43.2464 0.0 96.791 High  
cufflinks 39.3429 0.0 87.6542 High  
cufflinks 45.5814 0.0 102.279 High  
cufflinks 40.6054 0.0 90.5555 High  
cufflinks 25.4106 0.0 56.1947   Low

0 Strain