Gene : Eucgr.H00450 E. grandis v2.0
Defline:  (1 of 2) PTHR31423:SF3 - PROLYL-TRNA SYNTHETASE ASSOCIATED DOMAIN-CONTAINING PROTEIN 1-RELATED Genomic Order:  176
Name:  ? Eucgr.H00450 Secondary Identifier:  ? PAC:32041543
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Egrandis TRNA-CHARGING-PWY Eucalyptus grandis pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.H00450 0.5kb upstream 0.5kb upstream 6776 true Chr08: 2681521-2688296 Eucalyptus grandis
Eucgr.H00450 0.5kb upstream 0.5kb upstream 500 false Chr08: 2687797-2688296 Eucalyptus grandis
Eucgr.H00450 0.5kb downstream 0.5kb downstream 6776 true Chr08: 2681021-2687796 Eucalyptus grandis
Eucgr.H00450 0.5kb downstream 0.5kb downstream 500 false Chr08: 2681021-2681520 Eucalyptus grandis
Eucgr.H00450 1.0kb upstream 1.0kb upstream 7276 true Chr08: 2681521-2688796 Eucalyptus grandis
Eucgr.H00450 1.0kb upstream 1.0kb upstream 1000 false Chr08: 2687797-2688796 Eucalyptus grandis
Eucgr.H00450 1.0kb downstream 1.0kb downstream 7276 true Chr08: 2680521-2687796 Eucalyptus grandis
Eucgr.H00450 1.0kb downstream 1.0kb downstream 1000 false Chr08: 2680521-2681520 Eucalyptus grandis
Eucgr.H00450 2.0kb upstream 2.0kb upstream 8276 true Chr08: 2681521-2689796 Eucalyptus grandis
Eucgr.H00450 2.0kb upstream 2.0kb upstream 2000 false Chr08: 2687797-2689796 Eucalyptus grandis
Eucgr.H00450 2.0kb downstream 2.0kb downstream 8276 true Chr08: 2679521-2687796 Eucalyptus grandis
Eucgr.H00450 2.0kb downstream 2.0kb downstream 2000 false Chr08: 2679521-2681520 Eucalyptus grandis
Eucgr.H00450 5.0kb upstream 5.0kb upstream 11276 true Chr08: 2681521-2692796 Eucalyptus grandis
Eucgr.H00450 5.0kb upstream 5.0kb upstream 5000 false Chr08: 2687797-2692796 Eucalyptus grandis
Eucgr.H00450 5.0kb downstream 5.0kb downstream 11276 true Chr08: 2676521-2687796 Eucalyptus grandis
Eucgr.H00450 5.0kb downstream 5.0kb downstream 5000 false Chr08: 2676521-2681520 Eucalyptus grandis
Eucgr.H00450 10.0kb upstream 10.0kb upstream 16276 true Chr08: 2681521-2697796 Eucalyptus grandis
Eucgr.H00450 10.0kb upstream 10.0kb upstream 10000 false Chr08: 2687797-2697796 Eucalyptus grandis
Eucgr.H00450 10.0kb downstream 10.0kb downstream 16276 true Chr08: 2671521-2687796 Eucalyptus grandis
Eucgr.H00450 10.0kb downstream 10.0kb downstream 10000 false Chr08: 2671521-2681520 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124062922 5270 Rosid View MSA
123736377 5271 Pentapetalae View MSA
122789736 5272 Eudicot View MSA
122045268 5273 Angiosperm View MSA
121348045 5274 Embryophyte View MSA
123425543 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 14.1025 0.0 32.1971    
cufflinks 7.89224 0.0 18.8172   Low
cufflinks 12.9912 0.0 29.7921    
cufflinks 15.862 0.0 35.8817    
cufflinks 13.7553 0.0 31.4403    
cufflinks 12.2794 0.0 28.4116    

0 Strain