Gene : Eucgr.H00428 E. grandis v2.0
Defline:  (1 of 1) PTHR13343:SF18 - PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN-LIKE PROTEIN Genomic Order:  159
Name:  ? Eucgr.H00428 Secondary Identifier:  ? PAC:32045583
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.H00428 0.5kb upstream 0.5kb upstream 7863 true Chr08: 2388923-2396785 Eucalyptus grandis
Eucgr.H00428 0.5kb upstream 0.5kb upstream 500 false Chr08: 2396286-2396785 Eucalyptus grandis
Eucgr.H00428 0.5kb downstream 0.5kb downstream 7863 true Chr08: 2388423-2396285 Eucalyptus grandis
Eucgr.H00428 0.5kb downstream 0.5kb downstream 500 false Chr08: 2388423-2388922 Eucalyptus grandis
Eucgr.H00428 1.0kb upstream 1.0kb upstream 8363 true Chr08: 2388923-2397285 Eucalyptus grandis
Eucgr.H00428 1.0kb upstream 1.0kb upstream 1000 false Chr08: 2396286-2397285 Eucalyptus grandis
Eucgr.H00428 1.0kb downstream 1.0kb downstream 8363 true Chr08: 2387923-2396285 Eucalyptus grandis
Eucgr.H00428 1.0kb downstream 1.0kb downstream 1000 false Chr08: 2387923-2388922 Eucalyptus grandis
Eucgr.H00428 2.0kb upstream 2.0kb upstream 9363 true Chr08: 2388923-2398285 Eucalyptus grandis
Eucgr.H00428 2.0kb upstream 2.0kb upstream 2000 false Chr08: 2396286-2398285 Eucalyptus grandis
Eucgr.H00428 2.0kb downstream 2.0kb downstream 9363 true Chr08: 2386923-2396285 Eucalyptus grandis
Eucgr.H00428 2.0kb downstream 2.0kb downstream 2000 false Chr08: 2386923-2388922 Eucalyptus grandis
Eucgr.H00428 5.0kb upstream 5.0kb upstream 12363 true Chr08: 2388923-2401285 Eucalyptus grandis
Eucgr.H00428 5.0kb upstream 5.0kb upstream 5000 false Chr08: 2396286-2401285 Eucalyptus grandis
Eucgr.H00428 5.0kb downstream 5.0kb downstream 12363 true Chr08: 2383923-2396285 Eucalyptus grandis
Eucgr.H00428 5.0kb downstream 5.0kb downstream 5000 false Chr08: 2383923-2388922 Eucalyptus grandis
Eucgr.H00428 10.0kb upstream 10.0kb upstream 17363 true Chr08: 2388923-2406285 Eucalyptus grandis
Eucgr.H00428 10.0kb upstream 10.0kb upstream 10000 false Chr08: 2396286-2406285 Eucalyptus grandis
Eucgr.H00428 10.0kb downstream 10.0kb downstream 17363 true Chr08: 2378923-2396285 Eucalyptus grandis
Eucgr.H00428 10.0kb downstream 10.0kb downstream 10000 false Chr08: 2378923-2388922 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124068606 5270 Rosid View MSA
123738942 5271 Pentapetalae View MSA
122769938 5272 Eudicot View MSA
122050575 5273 Angiosperm View MSA
121348228 5274 Embryophyte View MSA
123380781 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 12.6934 0.0 33.435    
cufflinks 28.6704 0.0 76.5953   High
cufflinks 10.9816 0.0 27.4526    
cufflinks 26.3891 0.0 70.0734   High
cufflinks 10.275 0.0 28.3058    
cufflinks 13.2523 0.0 37.2133    

0 Strain