Gene : Eucgr.H00408 E. grandis v2.0
Defline:  (1 of 6) PTHR13952:SF6 - U11/U12 SMALL NUCLEAR RIBONUCLEOPROTEIN 35 KDA PROTEIN Genomic Order:  140
Name:  ? Eucgr.H00408 Secondary Identifier:  ? PAC:32044935
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.H00408 0.5kb upstream 0.5kb upstream 4271 true Chr08: 2199123-2203393 Eucalyptus grandis
Eucgr.H00408 0.5kb upstream 0.5kb upstream 500 false Chr08: 2199123-2199622 Eucalyptus grandis
Eucgr.H00408 0.5kb downstream 0.5kb downstream 4271 true Chr08: 2199623-2203893 Eucalyptus grandis
Eucgr.H00408 0.5kb downstream 0.5kb downstream 500 false Chr08: 2203394-2203893 Eucalyptus grandis
Eucgr.H00408 1.0kb upstream 1.0kb upstream 4771 true Chr08: 2198623-2203393 Eucalyptus grandis
Eucgr.H00408 1.0kb upstream 1.0kb upstream 1000 false Chr08: 2198623-2199622 Eucalyptus grandis
Eucgr.H00408 1.0kb downstream 1.0kb downstream 4771 true Chr08: 2199623-2204393 Eucalyptus grandis
Eucgr.H00408 1.0kb downstream 1.0kb downstream 1000 false Chr08: 2203394-2204393 Eucalyptus grandis
Eucgr.H00408 2.0kb upstream 2.0kb upstream 5771 true Chr08: 2197623-2203393 Eucalyptus grandis
Eucgr.H00408 2.0kb upstream 2.0kb upstream 2000 false Chr08: 2197623-2199622 Eucalyptus grandis
Eucgr.H00408 2.0kb downstream 2.0kb downstream 5771 true Chr08: 2199623-2205393 Eucalyptus grandis
Eucgr.H00408 2.0kb downstream 2.0kb downstream 2000 false Chr08: 2203394-2205393 Eucalyptus grandis
Eucgr.H00408 5.0kb upstream 5.0kb upstream 8771 true Chr08: 2194623-2203393 Eucalyptus grandis
Eucgr.H00408 5.0kb upstream 5.0kb upstream 5000 false Chr08: 2194623-2199622 Eucalyptus grandis
Eucgr.H00408 5.0kb downstream 5.0kb downstream 8771 true Chr08: 2199623-2208393 Eucalyptus grandis
Eucgr.H00408 5.0kb downstream 5.0kb downstream 5000 false Chr08: 2203394-2208393 Eucalyptus grandis
Eucgr.H00408 10.0kb upstream 10.0kb upstream 13771 true Chr08: 2189623-2203393 Eucalyptus grandis
Eucgr.H00408 10.0kb upstream 10.0kb upstream 10000 false Chr08: 2189623-2199622 Eucalyptus grandis
Eucgr.H00408 10.0kb downstream 10.0kb downstream 13771 true Chr08: 2199623-2213393 Eucalyptus grandis
Eucgr.H00408 10.0kb downstream 10.0kb downstream 10000 false Chr08: 2203394-2213393 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124062373 5270 Rosid View MSA
123739426 5271 Pentapetalae View MSA
122792874 5272 Eudicot View MSA
122049449 5273 Angiosperm View MSA
123429142 5275 Viridiplantae View MSA
121351469 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.0433 0.0 8.50337   Low
cufflinks 3.22275 0.0 8.94594    
cufflinks 5.54085 0.0 14.6226    
cufflinks 10.6136 0.0 26.2447   High
cufflinks 11.419 0.0 27.9808   High
cufflinks 4.07876 0.0 11.0904    

0 Strain