Gene : Eucgr.H00409 E. grandis v2.0
Defline:  (1 of 6) PTHR13952:SF6 - U11/U12 SMALL NUCLEAR RIBONUCLEOPROTEIN 35 KDA PROTEIN Genomic Order:  141
Name:  ? Eucgr.H00409 Secondary Identifier:  ? PAC:32041086
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

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Cufflinks Score Displayer

 

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.H00409 0.5kb upstream 0.5kb upstream 4464 true Chr08: 2210274-2214737 Eucalyptus grandis
Eucgr.H00409 0.5kb upstream 0.5kb upstream 500 false Chr08: 2210274-2210773 Eucalyptus grandis
Eucgr.H00409 0.5kb downstream 0.5kb downstream 4464 true Chr08: 2210774-2215237 Eucalyptus grandis
Eucgr.H00409 0.5kb downstream 0.5kb downstream 500 false Chr08: 2214738-2215237 Eucalyptus grandis
Eucgr.H00409 1.0kb upstream 1.0kb upstream 4964 true Chr08: 2209774-2214737 Eucalyptus grandis
Eucgr.H00409 1.0kb upstream 1.0kb upstream 1000 false Chr08: 2209774-2210773 Eucalyptus grandis
Eucgr.H00409 1.0kb downstream 1.0kb downstream 4964 true Chr08: 2210774-2215737 Eucalyptus grandis
Eucgr.H00409 1.0kb downstream 1.0kb downstream 1000 false Chr08: 2214738-2215737 Eucalyptus grandis
Eucgr.H00409 2.0kb upstream 2.0kb upstream 5964 true Chr08: 2208774-2214737 Eucalyptus grandis
Eucgr.H00409 2.0kb upstream 2.0kb upstream 2000 false Chr08: 2208774-2210773 Eucalyptus grandis
Eucgr.H00409 2.0kb downstream 2.0kb downstream 5964 true Chr08: 2210774-2216737 Eucalyptus grandis
Eucgr.H00409 2.0kb downstream 2.0kb downstream 2000 false Chr08: 2214738-2216737 Eucalyptus grandis
Eucgr.H00409 5.0kb upstream 5.0kb upstream 8964 true Chr08: 2205774-2214737 Eucalyptus grandis
Eucgr.H00409 5.0kb upstream 5.0kb upstream 5000 false Chr08: 2205774-2210773 Eucalyptus grandis
Eucgr.H00409 5.0kb downstream 5.0kb downstream 8964 true Chr08: 2210774-2219737 Eucalyptus grandis
Eucgr.H00409 5.0kb downstream 5.0kb downstream 5000 false Chr08: 2214738-2219737 Eucalyptus grandis
Eucgr.H00409 10.0kb upstream 10.0kb upstream 13964 true Chr08: 2200774-2214737 Eucalyptus grandis
Eucgr.H00409 10.0kb upstream 10.0kb upstream 10000 false Chr08: 2200774-2210773 Eucalyptus grandis
Eucgr.H00409 10.0kb downstream 10.0kb downstream 13964 true Chr08: 2210774-2224737 Eucalyptus grandis
Eucgr.H00409 10.0kb downstream 10.0kb downstream 10000 false Chr08: 2214738-2224737 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124062373 5270 Rosid View MSA
123739426 5271 Pentapetalae View MSA
122792874 5272 Eudicot View MSA
122049449 5273 Angiosperm View MSA
123429142 5275 Viridiplantae View MSA
121351469 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.200538 0.0 0.748066 Low Low
cufflinks 2.68875 0.0 7.33041    
cufflinks 1.23219 0.0 3.64515    
cufflinks 2.09156 0.0 5.85143    
cufflinks 1.38544 0.0 4.03736    
cufflinks 0.937432 0.0 2.86067    

0 Strain