Gene : Eucgr.H00398 E. grandis v2.0
Defline:  (1 of 235) PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Genomic Order:  132
Name:  ? Eucgr.H00398 Secondary Identifier:  ? PAC:32043060
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.H00398 0.5kb upstream 0.5kb upstream 2753 true Chr08: 2089120-2091872 Eucalyptus grandis
Eucgr.H00398 0.5kb upstream 0.5kb upstream 500 false Chr08: 2091373-2091872 Eucalyptus grandis
Eucgr.H00398 0.5kb downstream 0.5kb downstream 2753 true Chr08: 2088620-2091372 Eucalyptus grandis
Eucgr.H00398 0.5kb downstream 0.5kb downstream 500 false Chr08: 2088620-2089119 Eucalyptus grandis
Eucgr.H00398 1.0kb upstream 1.0kb upstream 3253 true Chr08: 2089120-2092372 Eucalyptus grandis
Eucgr.H00398 1.0kb upstream 1.0kb upstream 1000 false Chr08: 2091373-2092372 Eucalyptus grandis
Eucgr.H00398 1.0kb downstream 1.0kb downstream 3253 true Chr08: 2088120-2091372 Eucalyptus grandis
Eucgr.H00398 1.0kb downstream 1.0kb downstream 1000 false Chr08: 2088120-2089119 Eucalyptus grandis
Eucgr.H00398 2.0kb upstream 2.0kb upstream 4253 true Chr08: 2089120-2093372 Eucalyptus grandis
Eucgr.H00398 2.0kb upstream 2.0kb upstream 2000 false Chr08: 2091373-2093372 Eucalyptus grandis
Eucgr.H00398 2.0kb downstream 2.0kb downstream 4253 true Chr08: 2087120-2091372 Eucalyptus grandis
Eucgr.H00398 2.0kb downstream 2.0kb downstream 2000 false Chr08: 2087120-2089119 Eucalyptus grandis
Eucgr.H00398 5.0kb upstream 5.0kb upstream 7253 true Chr08: 2089120-2096372 Eucalyptus grandis
Eucgr.H00398 5.0kb upstream 5.0kb upstream 5000 false Chr08: 2091373-2096372 Eucalyptus grandis
Eucgr.H00398 5.0kb downstream 5.0kb downstream 7253 true Chr08: 2084120-2091372 Eucalyptus grandis
Eucgr.H00398 5.0kb downstream 5.0kb downstream 5000 false Chr08: 2084120-2089119 Eucalyptus grandis
Eucgr.H00398 10.0kb upstream 10.0kb upstream 12253 true Chr08: 2089120-2101372 Eucalyptus grandis
Eucgr.H00398 10.0kb upstream 10.0kb upstream 10000 false Chr08: 2091373-2101372 Eucalyptus grandis
Eucgr.H00398 10.0kb downstream 10.0kb downstream 12253 true Chr08: 2079120-2091372 Eucalyptus grandis
Eucgr.H00398 10.0kb downstream 10.0kb downstream 10000 false Chr08: 2079120-2089119 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124061137 5270 Rosid View MSA
123742346 5271 Pentapetalae View MSA
122794962 5272 Eudicot View MSA
122044957 5273 Angiosperm View MSA
121352585 5274 Embryophyte View MSA
123382887 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.108306 0.0 0.397905 Low Low
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.316215 0.0 1.00078 Low  
cufflinks 0.419167 0.0 1.27328 Low High
cufflinks 0.170017 0.0 0.585184 Low  
cufflinks 0.253138 0.0 0.837373 Low  

0 Strain