Gene : Eucgr.H00245 E. grandis v2.0
Defline:  (1 of 80) PF03168 - Late embryogenesis abundant protein (LEA_2) Genomic Order:  9
Name:  ? Eucgr.H00245 Secondary Identifier:  ? PAC:32043787
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.H00245 0.5kb upstream 0.5kb upstream 3763 true Chr08: 242004-245766 Eucalyptus grandis
Eucgr.H00245 0.5kb upstream 0.5kb upstream 500 false Chr08: 245267-245766 Eucalyptus grandis
Eucgr.H00245 0.5kb downstream 0.5kb downstream 3763 true Chr08: 241504-245266 Eucalyptus grandis
Eucgr.H00245 0.5kb downstream 0.5kb downstream 500 false Chr08: 241504-242003 Eucalyptus grandis
Eucgr.H00245 1.0kb upstream 1.0kb upstream 4263 true Chr08: 242004-246266 Eucalyptus grandis
Eucgr.H00245 1.0kb upstream 1.0kb upstream 1000 false Chr08: 245267-246266 Eucalyptus grandis
Eucgr.H00245 1.0kb downstream 1.0kb downstream 4263 true Chr08: 241004-245266 Eucalyptus grandis
Eucgr.H00245 1.0kb downstream 1.0kb downstream 1000 false Chr08: 241004-242003 Eucalyptus grandis
Eucgr.H00245 2.0kb upstream 2.0kb upstream 5263 true Chr08: 242004-247266 Eucalyptus grandis
Eucgr.H00245 2.0kb upstream 2.0kb upstream 2000 false Chr08: 245267-247266 Eucalyptus grandis
Eucgr.H00245 2.0kb downstream 2.0kb downstream 5263 true Chr08: 240004-245266 Eucalyptus grandis
Eucgr.H00245 2.0kb downstream 2.0kb downstream 2000 false Chr08: 240004-242003 Eucalyptus grandis
Eucgr.H00245 5.0kb upstream 5.0kb upstream 8263 true Chr08: 242004-250266 Eucalyptus grandis
Eucgr.H00245 5.0kb upstream 5.0kb upstream 5000 false Chr08: 245267-250266 Eucalyptus grandis
Eucgr.H00245 5.0kb downstream 5.0kb downstream 8263 true Chr08: 237004-245266 Eucalyptus grandis
Eucgr.H00245 5.0kb downstream 5.0kb downstream 5000 false Chr08: 237004-242003 Eucalyptus grandis
Eucgr.H00245 10.0kb upstream 10.0kb upstream 13263 true Chr08: 242004-255266 Eucalyptus grandis
Eucgr.H00245 10.0kb upstream 10.0kb upstream 10000 false Chr08: 245267-255266 Eucalyptus grandis
Eucgr.H00245 10.0kb downstream 10.0kb downstream 13263 true Chr08: 232004-245266 Eucalyptus grandis
Eucgr.H00245 10.0kb downstream 10.0kb downstream 10000 false Chr08: 232004-242003 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124066390 5270 Rosid View MSA
123747844 5271 Pentapetalae View MSA
122788467 5272 Eudicot View MSA
122045066 5273 Angiosperm View MSA
121350373 5274 Embryophyte View MSA
123381702 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 70.4355 0.0 190.926 High Low
cufflinks 111.524 0.0 289.969 High  
cufflinks 65.7867 0.0 196.446 High Low
cufflinks 116.821 0.0 354.277 High  
cufflinks 105.331 0.0 307.695 High  
cufflinks 107.548 0.0 306.165 High  

0 Strain