Gene : Eucgr.H01214 E. grandis v2.0
Defline:  (1 of 1) PTHR21089//PTHR21089:SF7 - SHIKIMATE DEHYDROGENASE Genomic Order:  990
Name:  ? Eucgr.H01214 Secondary Identifier:  ? PAC:32045680
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Egrandis ARO-PWY Eucalyptus grandis pathologic  
Egrandis PWY-6163 Eucalyptus grandis pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.H01214 0.5kb upstream 0.5kb upstream 6276 true Chr08: 13999031-14005306 Eucalyptus grandis
Eucgr.H01214 0.5kb upstream 0.5kb upstream 500 false Chr08: 13999031-13999530 Eucalyptus grandis
Eucgr.H01214 0.5kb downstream 0.5kb downstream 6276 true Chr08: 13999531-14005806 Eucalyptus grandis
Eucgr.H01214 0.5kb downstream 0.5kb downstream 500 false Chr08: 14005307-14005806 Eucalyptus grandis
Eucgr.H01214 1.0kb upstream 1.0kb upstream 6776 true Chr08: 13998531-14005306 Eucalyptus grandis
Eucgr.H01214 1.0kb upstream 1.0kb upstream 1000 false Chr08: 13998531-13999530 Eucalyptus grandis
Eucgr.H01214 1.0kb downstream 1.0kb downstream 6776 true Chr08: 13999531-14006306 Eucalyptus grandis
Eucgr.H01214 1.0kb downstream 1.0kb downstream 1000 false Chr08: 14005307-14006306 Eucalyptus grandis
Eucgr.H01214 2.0kb upstream 2.0kb upstream 7776 true Chr08: 13997531-14005306 Eucalyptus grandis
Eucgr.H01214 2.0kb upstream 2.0kb upstream 2000 false Chr08: 13997531-13999530 Eucalyptus grandis
Eucgr.H01214 2.0kb downstream 2.0kb downstream 7776 true Chr08: 13999531-14007306 Eucalyptus grandis
Eucgr.H01214 2.0kb downstream 2.0kb downstream 2000 false Chr08: 14005307-14007306 Eucalyptus grandis
Eucgr.H01214 5.0kb upstream 5.0kb upstream 10776 true Chr08: 13994531-14005306 Eucalyptus grandis
Eucgr.H01214 5.0kb upstream 5.0kb upstream 5000 false Chr08: 13994531-13999530 Eucalyptus grandis
Eucgr.H01214 5.0kb downstream 5.0kb downstream 10776 true Chr08: 13999531-14010306 Eucalyptus grandis
Eucgr.H01214 5.0kb downstream 5.0kb downstream 5000 false Chr08: 14005307-14010306 Eucalyptus grandis
Eucgr.H01214 10.0kb upstream 10.0kb upstream 15776 true Chr08: 13989531-14005306 Eucalyptus grandis
Eucgr.H01214 10.0kb upstream 10.0kb upstream 10000 false Chr08: 13989531-13999530 Eucalyptus grandis
Eucgr.H01214 10.0kb downstream 10.0kb downstream 15776 true Chr08: 13999531-14015306 Eucalyptus grandis
Eucgr.H01214 10.0kb downstream 10.0kb downstream 10000 false Chr08: 14005307-14015306 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121791917 5273 Angiosperm View MSA
124070168 5270 Rosid View MSA
123749206 5271 Pentapetalae View MSA
122795293 5272 Eudicot View MSA
121063186 5274 Embryophyte View MSA
123102956 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 15.3669 0.0 34.4742    
cufflinks 6.05547 0.0 14.6018    
cufflinks 3.91842 0.0 9.8979   Low
cufflinks 8.96617 0.0 20.9158    
cufflinks 26.8038 0.0 59.3163   High
cufflinks 23.663 0.0 52.4137    

0 Strain