Gene : Eucgr.H01006 E. grandis v2.0
Defline:  (1 of 1) PTHR10381:SF12 - ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT 5, CHLOROPLASTIC Genomic Order:  805
Name:  ? Eucgr.H01006 Secondary Identifier:  ? PAC:32042147
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.H01006 0.5kb upstream 0.5kb upstream 4473 true Chr08: 11720613-11725085 Eucalyptus grandis
Eucgr.H01006 0.5kb upstream 0.5kb upstream 500 false Chr08: 11720613-11721112 Eucalyptus grandis
Eucgr.H01006 0.5kb downstream 0.5kb downstream 4473 true Chr08: 11721113-11725585 Eucalyptus grandis
Eucgr.H01006 0.5kb downstream 0.5kb downstream 500 false Chr08: 11725086-11725585 Eucalyptus grandis
Eucgr.H01006 1.0kb upstream 1.0kb upstream 4973 true Chr08: 11720113-11725085 Eucalyptus grandis
Eucgr.H01006 1.0kb upstream 1.0kb upstream 1000 false Chr08: 11720113-11721112 Eucalyptus grandis
Eucgr.H01006 1.0kb downstream 1.0kb downstream 4973 true Chr08: 11721113-11726085 Eucalyptus grandis
Eucgr.H01006 1.0kb downstream 1.0kb downstream 1000 false Chr08: 11725086-11726085 Eucalyptus grandis
Eucgr.H01006 2.0kb upstream 2.0kb upstream 5973 true Chr08: 11719113-11725085 Eucalyptus grandis
Eucgr.H01006 2.0kb upstream 2.0kb upstream 2000 false Chr08: 11719113-11721112 Eucalyptus grandis
Eucgr.H01006 2.0kb downstream 2.0kb downstream 5973 true Chr08: 11721113-11727085 Eucalyptus grandis
Eucgr.H01006 2.0kb downstream 2.0kb downstream 2000 false Chr08: 11725086-11727085 Eucalyptus grandis
Eucgr.H01006 5.0kb upstream 5.0kb upstream 8973 true Chr08: 11716113-11725085 Eucalyptus grandis
Eucgr.H01006 5.0kb upstream 5.0kb upstream 5000 false Chr08: 11716113-11721112 Eucalyptus grandis
Eucgr.H01006 5.0kb downstream 5.0kb downstream 8973 true Chr08: 11721113-11730085 Eucalyptus grandis
Eucgr.H01006 5.0kb downstream 5.0kb downstream 5000 false Chr08: 11725086-11730085 Eucalyptus grandis
Eucgr.H01006 10.0kb upstream 10.0kb upstream 13973 true Chr08: 11711113-11725085 Eucalyptus grandis
Eucgr.H01006 10.0kb upstream 10.0kb upstream 10000 false Chr08: 11711113-11721112 Eucalyptus grandis
Eucgr.H01006 10.0kb downstream 10.0kb downstream 13973 true Chr08: 11721113-11735085 Eucalyptus grandis
Eucgr.H01006 10.0kb downstream 10.0kb downstream 10000 false Chr08: 11725086-11735085 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124067501 5270 Rosid View MSA
123746339 5271 Pentapetalae View MSA
122771871 5272 Eudicot View MSA
122043333 5273 Angiosperm View MSA
121344238 5274 Embryophyte View MSA
123424888 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 43.1833 0.0 95.6281 High  
cufflinks 14.4273 0.0 32.5982    
cufflinks 28.9377 0.0 64.0486 High  
cufflinks 14.6107 0.0 32.9832    
cufflinks 14.3379 0.0 32.4563    
cufflinks 98.8899 0.0 225.949 High High

0 Strain