Gene : Eucgr.H01704 E. grandis v2.0
Defline:  (1 of 5) PF02338//PF02810 - OTU-like cysteine protease (OTU) // SEC-C motif (SEC-C) Genomic Order:  1524
Name:  ? Eucgr.H01704 Secondary Identifier:  ? PAC:32042543
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.H01704 0.5kb upstream 0.5kb upstream 7149 true Chr08: 22453344-22460492 Eucalyptus grandis
Eucgr.H01704 0.5kb upstream 0.5kb upstream 500 false Chr08: 22453344-22453843 Eucalyptus grandis
Eucgr.H01704 0.5kb downstream 0.5kb downstream 7149 true Chr08: 22453844-22460992 Eucalyptus grandis
Eucgr.H01704 0.5kb downstream 0.5kb downstream 500 false Chr08: 22460493-22460992 Eucalyptus grandis
Eucgr.H01704 1.0kb upstream 1.0kb upstream 7649 true Chr08: 22452844-22460492 Eucalyptus grandis
Eucgr.H01704 1.0kb upstream 1.0kb upstream 1000 false Chr08: 22452844-22453843 Eucalyptus grandis
Eucgr.H01704 1.0kb downstream 1.0kb downstream 7649 true Chr08: 22453844-22461492 Eucalyptus grandis
Eucgr.H01704 1.0kb downstream 1.0kb downstream 1000 false Chr08: 22460493-22461492 Eucalyptus grandis
Eucgr.H01704 2.0kb upstream 2.0kb upstream 8649 true Chr08: 22451844-22460492 Eucalyptus grandis
Eucgr.H01704 2.0kb upstream 2.0kb upstream 2000 false Chr08: 22451844-22453843 Eucalyptus grandis
Eucgr.H01704 2.0kb downstream 2.0kb downstream 8649 true Chr08: 22453844-22462492 Eucalyptus grandis
Eucgr.H01704 2.0kb downstream 2.0kb downstream 2000 false Chr08: 22460493-22462492 Eucalyptus grandis
Eucgr.H01704 5.0kb upstream 5.0kb upstream 11649 true Chr08: 22448844-22460492 Eucalyptus grandis
Eucgr.H01704 5.0kb upstream 5.0kb upstream 5000 false Chr08: 22448844-22453843 Eucalyptus grandis
Eucgr.H01704 5.0kb downstream 5.0kb downstream 11649 true Chr08: 22453844-22465492 Eucalyptus grandis
Eucgr.H01704 5.0kb downstream 5.0kb downstream 5000 false Chr08: 22460493-22465492 Eucalyptus grandis
Eucgr.H01704 10.0kb upstream 10.0kb upstream 16649 true Chr08: 22443844-22460492 Eucalyptus grandis
Eucgr.H01704 10.0kb upstream 10.0kb upstream 10000 false Chr08: 22443844-22453843 Eucalyptus grandis
Eucgr.H01704 10.0kb downstream 10.0kb downstream 16649 true Chr08: 22453844-22470492 Eucalyptus grandis
Eucgr.H01704 10.0kb downstream 10.0kb downstream 10000 false Chr08: 22460493-22470492 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124066483 5270 Rosid View MSA
123745546 5271 Pentapetalae View MSA
122787389 5272 Eudicot View MSA
122041608 5273 Angiosperm View MSA
121347051 5274 Embryophyte View MSA
123428461 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.00565 0.0 2.92932   Low
cufflinks 2.04763 0.0 5.5144    
cufflinks 2.5439 0.0 6.70798    
cufflinks 1.87169 0.0 5.06435    
cufflinks 0.939789 0.0 2.74563   Low
cufflinks 2.79152 0.0 7.37258   High

0 Strain