Gene : Eucgr.H01428 E. grandis v2.0
Defline:  (1 of 1) PF00289//PF00364//PF02785//PF13535 - Carbamoyl-phosphate synthase L chain, N-terminal domain (CPSase_L_chain) // Biotin-requiring enzyme (Biotin_lipoyl) // Biotin carboxylase C-terminal domain (Biotin_carb_C) // ATP-grasp domain (ATP-grasp_4) Genomic Order:  1177
Name:  ? Eucgr.H01428 Secondary Identifier:  ? PAC:32043931
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Egrandis LEU-DEG2-PWY Eucalyptus grandis pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.H01428 0.5kb upstream 0.5kb upstream 7688 true Chr08: 16973991-16981678 Eucalyptus grandis
Eucgr.H01428 0.5kb upstream 0.5kb upstream 500 false Chr08: 16981179-16981678 Eucalyptus grandis
Eucgr.H01428 0.5kb downstream 0.5kb downstream 7688 true Chr08: 16973491-16981178 Eucalyptus grandis
Eucgr.H01428 0.5kb downstream 0.5kb downstream 500 false Chr08: 16973491-16973990 Eucalyptus grandis
Eucgr.H01428 1.0kb upstream 1.0kb upstream 8188 true Chr08: 16973991-16982178 Eucalyptus grandis
Eucgr.H01428 1.0kb upstream 1.0kb upstream 1000 false Chr08: 16981179-16982178 Eucalyptus grandis
Eucgr.H01428 1.0kb downstream 1.0kb downstream 8188 true Chr08: 16972991-16981178 Eucalyptus grandis
Eucgr.H01428 1.0kb downstream 1.0kb downstream 1000 false Chr08: 16972991-16973990 Eucalyptus grandis
Eucgr.H01428 2.0kb upstream 2.0kb upstream 9188 true Chr08: 16973991-16983178 Eucalyptus grandis
Eucgr.H01428 2.0kb upstream 2.0kb upstream 2000 false Chr08: 16981179-16983178 Eucalyptus grandis
Eucgr.H01428 2.0kb downstream 2.0kb downstream 9188 true Chr08: 16971991-16981178 Eucalyptus grandis
Eucgr.H01428 2.0kb downstream 2.0kb downstream 2000 false Chr08: 16971991-16973990 Eucalyptus grandis
Eucgr.H01428 5.0kb upstream 5.0kb upstream 12188 true Chr08: 16973991-16986178 Eucalyptus grandis
Eucgr.H01428 5.0kb upstream 5.0kb upstream 5000 false Chr08: 16981179-16986178 Eucalyptus grandis
Eucgr.H01428 5.0kb downstream 5.0kb downstream 12188 true Chr08: 16968991-16981178 Eucalyptus grandis
Eucgr.H01428 5.0kb downstream 5.0kb downstream 5000 false Chr08: 16968991-16973990 Eucalyptus grandis
Eucgr.H01428 10.0kb upstream 10.0kb upstream 17188 true Chr08: 16973991-16991178 Eucalyptus grandis
Eucgr.H01428 10.0kb upstream 10.0kb upstream 10000 false Chr08: 16981179-16991178 Eucalyptus grandis
Eucgr.H01428 10.0kb downstream 10.0kb downstream 17188 true Chr08: 16963991-16981178 Eucalyptus grandis
Eucgr.H01428 10.0kb downstream 10.0kb downstream 10000 false Chr08: 16963991-16973990 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124062314 5270 Rosid View MSA
123743627 5271 Pentapetalae View MSA
122788393 5272 Eudicot View MSA
122046633 5273 Angiosperm View MSA
121344540 5274 Embryophyte View MSA
123425779 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.74707 0.0 22.5341    
cufflinks 4.07976 0.0 11.0224    
cufflinks 6.73255 0.0 16.2225    
cufflinks 4.10284 0.0 12.6746    
cufflinks 2.31461 0.0 5.96158   Low
cufflinks 11.1806 0.0 25.5657   High

0 Strain