Gene : Eucgr.H01417 E. grandis v2.0
Defline:  (1 of 1) PF02786 - Carbamoyl-phosphate synthase L chain, ATP binding domain (CPSase_L_D2) Genomic Order:  1185
Name:  ? Eucgr.H01417 Secondary Identifier:  ? PAC:32043676
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Egrandis LEU-DEG2-PWY Eucalyptus grandis pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.H01417 0.5kb upstream 0.5kb upstream 6982 true Chr08: 17053786-17060767 Eucalyptus grandis
Eucgr.H01417 0.5kb upstream 0.5kb upstream 500 false Chr08: 17060268-17060767 Eucalyptus grandis
Eucgr.H01417 0.5kb downstream 0.5kb downstream 6982 true Chr08: 17053286-17060267 Eucalyptus grandis
Eucgr.H01417 0.5kb downstream 0.5kb downstream 500 false Chr08: 17053286-17053785 Eucalyptus grandis
Eucgr.H01417 1.0kb upstream 1.0kb upstream 7482 true Chr08: 17053786-17061267 Eucalyptus grandis
Eucgr.H01417 1.0kb upstream 1.0kb upstream 1000 false Chr08: 17060268-17061267 Eucalyptus grandis
Eucgr.H01417 1.0kb downstream 1.0kb downstream 7482 true Chr08: 17052786-17060267 Eucalyptus grandis
Eucgr.H01417 1.0kb downstream 1.0kb downstream 1000 false Chr08: 17052786-17053785 Eucalyptus grandis
Eucgr.H01417 2.0kb upstream 2.0kb upstream 8482 true Chr08: 17053786-17062267 Eucalyptus grandis
Eucgr.H01417 2.0kb upstream 2.0kb upstream 2000 false Chr08: 17060268-17062267 Eucalyptus grandis
Eucgr.H01417 2.0kb downstream 2.0kb downstream 8482 true Chr08: 17051786-17060267 Eucalyptus grandis
Eucgr.H01417 2.0kb downstream 2.0kb downstream 2000 false Chr08: 17051786-17053785 Eucalyptus grandis
Eucgr.H01417 5.0kb upstream 5.0kb upstream 11482 true Chr08: 17053786-17065267 Eucalyptus grandis
Eucgr.H01417 5.0kb upstream 5.0kb upstream 5000 false Chr08: 17060268-17065267 Eucalyptus grandis
Eucgr.H01417 5.0kb downstream 5.0kb downstream 11482 true Chr08: 17048786-17060267 Eucalyptus grandis
Eucgr.H01417 5.0kb downstream 5.0kb downstream 5000 false Chr08: 17048786-17053785 Eucalyptus grandis
Eucgr.H01417 10.0kb upstream 10.0kb upstream 16482 true Chr08: 17053786-17070267 Eucalyptus grandis
Eucgr.H01417 10.0kb upstream 10.0kb upstream 10000 false Chr08: 17060268-17070267 Eucalyptus grandis
Eucgr.H01417 10.0kb downstream 10.0kb downstream 16482 true Chr08: 17043786-17060267 Eucalyptus grandis
Eucgr.H01417 10.0kb downstream 10.0kb downstream 10000 false Chr08: 17043786-17053785 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124062314 5270 Rosid View MSA
123743627 5271 Pentapetalae View MSA
122788393 5272 Eudicot View MSA
122046633 5273 Angiosperm View MSA
121344540 5274 Embryophyte View MSA
123425779 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.96179 0.0 9.7838    
cufflinks 7.97508 0.0 18.3542   High
cufflinks 4.8178 0.0 11.6163    
cufflinks 1.82336 0.0 4.81884   Low
cufflinks 2.46402 0.0 6.35696    
cufflinks 7.39521 0.0 17.293    

0 Strain