Gene : Eucgr.H02200 E. grandis v2.0
Defline:  (1 of 5) PTHR13301//PTHR13301:SF43 - X-BOX TRANSCRIPTION FACTOR-RELATED Genomic Order:  1695
Name:  ? Eucgr.H02200 Secondary Identifier:  ? PAC:32045325
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Egrandis PWY-1001 Eucalyptus grandis pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.H02200 0.5kb upstream 0.5kb upstream 2908 true Chr08: 27695316-27698223 Eucalyptus grandis
Eucgr.H02200 0.5kb upstream 0.5kb upstream 500 false Chr08: 27695316-27695815 Eucalyptus grandis
Eucgr.H02200 0.5kb downstream 0.5kb downstream 2908 true Chr08: 27695816-27698723 Eucalyptus grandis
Eucgr.H02200 0.5kb downstream 0.5kb downstream 500 false Chr08: 27698224-27698723 Eucalyptus grandis
Eucgr.H02200 1.0kb upstream 1.0kb upstream 3408 true Chr08: 27694816-27698223 Eucalyptus grandis
Eucgr.H02200 1.0kb upstream 1.0kb upstream 1000 false Chr08: 27694816-27695815 Eucalyptus grandis
Eucgr.H02200 1.0kb downstream 1.0kb downstream 3408 true Chr08: 27695816-27699223 Eucalyptus grandis
Eucgr.H02200 1.0kb downstream 1.0kb downstream 1000 false Chr08: 27698224-27699223 Eucalyptus grandis
Eucgr.H02200 2.0kb upstream 2.0kb upstream 4408 true Chr08: 27693816-27698223 Eucalyptus grandis
Eucgr.H02200 2.0kb upstream 2.0kb upstream 2000 false Chr08: 27693816-27695815 Eucalyptus grandis
Eucgr.H02200 2.0kb downstream 2.0kb downstream 4408 true Chr08: 27695816-27700223 Eucalyptus grandis
Eucgr.H02200 2.0kb downstream 2.0kb downstream 2000 false Chr08: 27698224-27700223 Eucalyptus grandis
Eucgr.H02200 5.0kb upstream 5.0kb upstream 7408 true Chr08: 27690816-27698223 Eucalyptus grandis
Eucgr.H02200 5.0kb upstream 5.0kb upstream 5000 false Chr08: 27690816-27695815 Eucalyptus grandis
Eucgr.H02200 5.0kb downstream 5.0kb downstream 7408 true Chr08: 27695816-27703223 Eucalyptus grandis
Eucgr.H02200 5.0kb downstream 5.0kb downstream 5000 false Chr08: 27698224-27703223 Eucalyptus grandis
Eucgr.H02200 10.0kb upstream 10.0kb upstream 12408 true Chr08: 27685816-27698223 Eucalyptus grandis
Eucgr.H02200 10.0kb upstream 10.0kb upstream 10000 false Chr08: 27685816-27695815 Eucalyptus grandis
Eucgr.H02200 10.0kb downstream 10.0kb downstream 12408 true Chr08: 27695816-27708223 Eucalyptus grandis
Eucgr.H02200 10.0kb downstream 10.0kb downstream 10000 false Chr08: 27698224-27708223 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124073618 5270 Rosid View MSA
123753400 5271 Pentapetalae View MSA
122797245 5272 Eudicot View MSA
122051318 5273 Angiosperm View MSA
121351501 5274 Embryophyte View MSA
123382193 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.45262 0.0 6.51257    
cufflinks 2.72636 0.0 7.12585    
cufflinks 1.7296 0.0 4.68429    
cufflinks 1.83268 0.0 4.953    
cufflinks 0.577015 0.0 1.75449   Low
cufflinks 2.54377 0.0 6.6545    

0 Strain