Gene : Eucgr.H01947 E. grandis v2.0
Defline:  (1 of 1) PTHR33149:SF1 - PHOTOSYSTEM II D2 PROTEIN Genomic Order:  1402
Name:  ? Eucgr.H01947 Secondary Identifier:  ? PAC:32044769
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Egrandis PHOTOALL-PWY Eucalyptus grandis pathologic  
Egrandis PWY-101 Eucalyptus grandis pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.H01947 0.5kb upstream 0.5kb upstream 1582 true Chr08: 20233850-20235431 Eucalyptus grandis
Eucgr.H01947 0.5kb upstream 0.5kb upstream 500 false Chr08: 20233850-20234349 Eucalyptus grandis
Eucgr.H01947 0.5kb downstream 0.5kb downstream 1582 true Chr08: 20234350-20235931 Eucalyptus grandis
Eucgr.H01947 0.5kb downstream 0.5kb downstream 500 false Chr08: 20235432-20235931 Eucalyptus grandis
Eucgr.H01947 1.0kb upstream 1.0kb upstream 2082 true Chr08: 20233350-20235431 Eucalyptus grandis
Eucgr.H01947 1.0kb upstream 1.0kb upstream 1000 false Chr08: 20233350-20234349 Eucalyptus grandis
Eucgr.H01947 1.0kb downstream 1.0kb downstream 2082 true Chr08: 20234350-20236431 Eucalyptus grandis
Eucgr.H01947 1.0kb downstream 1.0kb downstream 1000 false Chr08: 20235432-20236431 Eucalyptus grandis
Eucgr.H01947 2.0kb upstream 2.0kb upstream 3082 true Chr08: 20232350-20235431 Eucalyptus grandis
Eucgr.H01947 2.0kb upstream 2.0kb upstream 2000 false Chr08: 20232350-20234349 Eucalyptus grandis
Eucgr.H01947 2.0kb downstream 2.0kb downstream 3082 true Chr08: 20234350-20237431 Eucalyptus grandis
Eucgr.H01947 2.0kb downstream 2.0kb downstream 2000 false Chr08: 20235432-20237431 Eucalyptus grandis
Eucgr.H01947 5.0kb upstream 5.0kb upstream 6082 true Chr08: 20229350-20235431 Eucalyptus grandis
Eucgr.H01947 5.0kb upstream 5.0kb upstream 5000 false Chr08: 20229350-20234349 Eucalyptus grandis
Eucgr.H01947 5.0kb downstream 5.0kb downstream 6082 true Chr08: 20234350-20240431 Eucalyptus grandis
Eucgr.H01947 5.0kb downstream 5.0kb downstream 5000 false Chr08: 20235432-20240431 Eucalyptus grandis
Eucgr.H01947 10.0kb upstream 10.0kb upstream 11082 true Chr08: 20224350-20235431 Eucalyptus grandis
Eucgr.H01947 10.0kb upstream 10.0kb upstream 10000 false Chr08: 20224350-20234349 Eucalyptus grandis
Eucgr.H01947 10.0kb downstream 10.0kb downstream 11082 true Chr08: 20234350-20245431 Eucalyptus grandis
Eucgr.H01947 10.0kb downstream 10.0kb downstream 10000 false Chr08: 20235432-20245431 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124074858 5270 Rosid View MSA
123753555 5271 Pentapetalae View MSA
122797414 5272 Eudicot View MSA
122047558 5273 Angiosperm View MSA
121350331 5274 Embryophyte View MSA
123381681 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.68917 0.0 24.8873    
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 4.42637 0.0 12.2211    
cufflinks 0.646167 0.0 2.21877   Low
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 41.0485 0.0 93.3976 High High

0 Strain