Gene : Eucgr.H02913 E. grandis v2.0
Defline:  (1 of 1) 4.2.1.33 - 3-isopropylmalate dehydratase / Isopropylmalate isomerase Genomic Order:  2279
Name:  ? Eucgr.H02913 Secondary Identifier:  ? PAC:32043182
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Egrandis BRANCHED-CHAIN-AA-SYN-PWY Eucalyptus grandis pathologic  
Egrandis LEUSYN-PWY Eucalyptus grandis pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.H02913 0.5kb upstream 0.5kb upstream 9703 true Chr08: 40938423-40948125 Eucalyptus grandis
Eucgr.H02913 0.5kb upstream 0.5kb upstream 500 false Chr08: 40938423-40938922 Eucalyptus grandis
Eucgr.H02913 0.5kb downstream 0.5kb downstream 9703 true Chr08: 40938923-40948625 Eucalyptus grandis
Eucgr.H02913 0.5kb downstream 0.5kb downstream 500 false Chr08: 40948126-40948625 Eucalyptus grandis
Eucgr.H02913 1.0kb upstream 1.0kb upstream 10203 true Chr08: 40937923-40948125 Eucalyptus grandis
Eucgr.H02913 1.0kb upstream 1.0kb upstream 1000 false Chr08: 40937923-40938922 Eucalyptus grandis
Eucgr.H02913 1.0kb downstream 1.0kb downstream 10203 true Chr08: 40938923-40949125 Eucalyptus grandis
Eucgr.H02913 1.0kb downstream 1.0kb downstream 1000 false Chr08: 40948126-40949125 Eucalyptus grandis
Eucgr.H02913 2.0kb upstream 2.0kb upstream 11203 true Chr08: 40936923-40948125 Eucalyptus grandis
Eucgr.H02913 2.0kb upstream 2.0kb upstream 2000 false Chr08: 40936923-40938922 Eucalyptus grandis
Eucgr.H02913 2.0kb downstream 2.0kb downstream 11203 true Chr08: 40938923-40950125 Eucalyptus grandis
Eucgr.H02913 2.0kb downstream 2.0kb downstream 2000 false Chr08: 40948126-40950125 Eucalyptus grandis
Eucgr.H02913 5.0kb upstream 5.0kb upstream 14203 true Chr08: 40933923-40948125 Eucalyptus grandis
Eucgr.H02913 5.0kb upstream 5.0kb upstream 5000 false Chr08: 40933923-40938922 Eucalyptus grandis
Eucgr.H02913 5.0kb downstream 5.0kb downstream 14203 true Chr08: 40938923-40953125 Eucalyptus grandis
Eucgr.H02913 5.0kb downstream 5.0kb downstream 5000 false Chr08: 40948126-40953125 Eucalyptus grandis
Eucgr.H02913 10.0kb upstream 10.0kb upstream 19203 true Chr08: 40928923-40948125 Eucalyptus grandis
Eucgr.H02913 10.0kb upstream 10.0kb upstream 10000 false Chr08: 40928923-40938922 Eucalyptus grandis
Eucgr.H02913 10.0kb downstream 10.0kb downstream 19203 true Chr08: 40938923-40958125 Eucalyptus grandis
Eucgr.H02913 10.0kb downstream 10.0kb downstream 10000 false Chr08: 40948126-40958125 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124064281 5270 Rosid View MSA
123737905 5271 Pentapetalae View MSA
122792861 5272 Eudicot View MSA
122047334 5273 Angiosperm View MSA
121347218 5274 Embryophyte View MSA
123428745 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 71.2476 0.0 163.278 High  
cufflinks 20.2326 0.0 45.4926    
cufflinks 64.9279 0.0 175.101 High  
cufflinks 13.8114 0.0 31.3981   Low
cufflinks 25.1387 0.0 56.7863    
cufflinks 60.2495 0.0 157.657 High  

0 Strain