Gene : Eucgr.H02649 E. grandis v2.0
Defline:  (1 of 1) 6.2.1.20 - Long-chain-fatty-acid--[acyl-carrier-protein] ligase / Acyl-[acyl-carrier-protein] synthetase Genomic Order:  2065
Name:  ? Eucgr.H02649 Secondary Identifier:  ? PAC:32045157
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Egrandis PWY-6622 Eucalyptus grandis pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.H02649 0.5kb upstream 0.5kb upstream 13775 true Chr08: 35818180-35831954 Eucalyptus grandis
Eucgr.H02649 0.5kb upstream 0.5kb upstream 500 false Chr08: 35818180-35818679 Eucalyptus grandis
Eucgr.H02649 0.5kb downstream 0.5kb downstream 13775 true Chr08: 35818680-35832454 Eucalyptus grandis
Eucgr.H02649 0.5kb downstream 0.5kb downstream 500 false Chr08: 35831955-35832454 Eucalyptus grandis
Eucgr.H02649 1.0kb upstream 1.0kb upstream 14275 true Chr08: 35817680-35831954 Eucalyptus grandis
Eucgr.H02649 1.0kb upstream 1.0kb upstream 1000 false Chr08: 35817680-35818679 Eucalyptus grandis
Eucgr.H02649 1.0kb downstream 1.0kb downstream 14275 true Chr08: 35818680-35832954 Eucalyptus grandis
Eucgr.H02649 1.0kb downstream 1.0kb downstream 1000 false Chr08: 35831955-35832954 Eucalyptus grandis
Eucgr.H02649 2.0kb upstream 2.0kb upstream 15275 true Chr08: 35816680-35831954 Eucalyptus grandis
Eucgr.H02649 2.0kb upstream 2.0kb upstream 2000 false Chr08: 35816680-35818679 Eucalyptus grandis
Eucgr.H02649 2.0kb downstream 2.0kb downstream 15275 true Chr08: 35818680-35833954 Eucalyptus grandis
Eucgr.H02649 2.0kb downstream 2.0kb downstream 2000 false Chr08: 35831955-35833954 Eucalyptus grandis
Eucgr.H02649 5.0kb upstream 5.0kb upstream 18275 true Chr08: 35813680-35831954 Eucalyptus grandis
Eucgr.H02649 5.0kb upstream 5.0kb upstream 5000 false Chr08: 35813680-35818679 Eucalyptus grandis
Eucgr.H02649 5.0kb downstream 5.0kb downstream 18275 true Chr08: 35818680-35836954 Eucalyptus grandis
Eucgr.H02649 5.0kb downstream 5.0kb downstream 5000 false Chr08: 35831955-35836954 Eucalyptus grandis
Eucgr.H02649 10.0kb upstream 10.0kb upstream 23275 true Chr08: 35808680-35831954 Eucalyptus grandis
Eucgr.H02649 10.0kb upstream 10.0kb upstream 10000 false Chr08: 35808680-35818679 Eucalyptus grandis
Eucgr.H02649 10.0kb downstream 10.0kb downstream 23275 true Chr08: 35818680-35841954 Eucalyptus grandis
Eucgr.H02649 10.0kb downstream 10.0kb downstream 10000 false Chr08: 35831955-35841954 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124063017 5270 Rosid View MSA
123740730 5271 Pentapetalae View MSA
122788844 5272 Eudicot View MSA
122041588 5273 Angiosperm View MSA
121344484 5274 Embryophyte View MSA
123427454 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 12.0765 0.0 26.8247   Low
cufflinks 24.2088 0.0 53.7977   High
cufflinks 13.4951 0.0 29.8859    
cufflinks 18.3616 0.0 40.6273    
cufflinks 19.4507 0.0 43.0406    
cufflinks 13.5001 0.0 29.9358    

0 Strain