Gene : Eucgr.H02624 E. grandis v2.0
Defline:  (1 of 1) PTHR23270//PTHR23270:SF9 - PROGRAMMED CELL DEATH PROTEIN 11 PRE-RRNA PROCESSING PROTEIN RRP5 Genomic Order:  2041
Name:  ? Eucgr.H02624 Secondary Identifier:  ? PAC:32044378
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.H02624 0.5kb upstream 0.5kb upstream 9614 true Chr08: 35392164-35401777 Eucalyptus grandis
Eucgr.H02624 0.5kb upstream 0.5kb upstream 500 false Chr08: 35401278-35401777 Eucalyptus grandis
Eucgr.H02624 0.5kb downstream 0.5kb downstream 9614 true Chr08: 35391664-35401277 Eucalyptus grandis
Eucgr.H02624 0.5kb downstream 0.5kb downstream 500 false Chr08: 35391664-35392163 Eucalyptus grandis
Eucgr.H02624 1.0kb upstream 1.0kb upstream 10114 true Chr08: 35392164-35402277 Eucalyptus grandis
Eucgr.H02624 1.0kb upstream 1.0kb upstream 1000 false Chr08: 35401278-35402277 Eucalyptus grandis
Eucgr.H02624 1.0kb downstream 1.0kb downstream 10114 true Chr08: 35391164-35401277 Eucalyptus grandis
Eucgr.H02624 1.0kb downstream 1.0kb downstream 1000 false Chr08: 35391164-35392163 Eucalyptus grandis
Eucgr.H02624 2.0kb upstream 2.0kb upstream 11114 true Chr08: 35392164-35403277 Eucalyptus grandis
Eucgr.H02624 2.0kb upstream 2.0kb upstream 2000 false Chr08: 35401278-35403277 Eucalyptus grandis
Eucgr.H02624 2.0kb downstream 2.0kb downstream 11114 true Chr08: 35390164-35401277 Eucalyptus grandis
Eucgr.H02624 2.0kb downstream 2.0kb downstream 2000 false Chr08: 35390164-35392163 Eucalyptus grandis
Eucgr.H02624 5.0kb upstream 5.0kb upstream 14114 true Chr08: 35392164-35406277 Eucalyptus grandis
Eucgr.H02624 5.0kb upstream 5.0kb upstream 5000 false Chr08: 35401278-35406277 Eucalyptus grandis
Eucgr.H02624 5.0kb downstream 5.0kb downstream 14114 true Chr08: 35387164-35401277 Eucalyptus grandis
Eucgr.H02624 5.0kb downstream 5.0kb downstream 5000 false Chr08: 35387164-35392163 Eucalyptus grandis
Eucgr.H02624 10.0kb upstream 10.0kb upstream 19114 true Chr08: 35392164-35411277 Eucalyptus grandis
Eucgr.H02624 10.0kb upstream 10.0kb upstream 10000 false Chr08: 35401278-35411277 Eucalyptus grandis
Eucgr.H02624 10.0kb downstream 10.0kb downstream 19114 true Chr08: 35382164-35401277 Eucalyptus grandis
Eucgr.H02624 10.0kb downstream 10.0kb downstream 10000 false Chr08: 35382164-35392163 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124064090 5270 Rosid View MSA
123737111 5271 Pentapetalae View MSA
122791346 5272 Eudicot View MSA
122043466 5273 Angiosperm View MSA
121344790 5274 Embryophyte View MSA
123423896 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 16.3111 0.0 36.5291    
cufflinks 4.99926 0.0 12.2266    
cufflinks 11.7526 0.0 26.7732    
cufflinks 1.54525 0.0 4.24816   Low
cufflinks 5.14798 0.0 12.588    
cufflinks 30.6659 0.0 67.8182   High

0 Strain