Gene : Eucgr.H02555 E. grandis v2.0
Defline:  (1 of 1) PTHR24015:SF705 - PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN Genomic Order:  1978
Name:  ? Eucgr.H02555 Secondary Identifier:  ? PAC:32043813
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Egrandis PWY-1081 Eucalyptus grandis pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.H02555 0.5kb upstream 0.5kb upstream 6060 true Chr08: 34028510-34034569 Eucalyptus grandis
Eucgr.H02555 0.5kb upstream 0.5kb upstream 500 false Chr08: 34028510-34029009 Eucalyptus grandis
Eucgr.H02555 0.5kb downstream 0.5kb downstream 6060 true Chr08: 34029010-34035069 Eucalyptus grandis
Eucgr.H02555 0.5kb downstream 0.5kb downstream 500 false Chr08: 34034570-34035069 Eucalyptus grandis
Eucgr.H02555 1.0kb upstream 1.0kb upstream 6560 true Chr08: 34028010-34034569 Eucalyptus grandis
Eucgr.H02555 1.0kb upstream 1.0kb upstream 1000 false Chr08: 34028010-34029009 Eucalyptus grandis
Eucgr.H02555 1.0kb downstream 1.0kb downstream 6560 true Chr08: 34029010-34035569 Eucalyptus grandis
Eucgr.H02555 1.0kb downstream 1.0kb downstream 1000 false Chr08: 34034570-34035569 Eucalyptus grandis
Eucgr.H02555 2.0kb upstream 2.0kb upstream 7560 true Chr08: 34027010-34034569 Eucalyptus grandis
Eucgr.H02555 2.0kb upstream 2.0kb upstream 2000 false Chr08: 34027010-34029009 Eucalyptus grandis
Eucgr.H02555 2.0kb downstream 2.0kb downstream 7560 true Chr08: 34029010-34036569 Eucalyptus grandis
Eucgr.H02555 2.0kb downstream 2.0kb downstream 2000 false Chr08: 34034570-34036569 Eucalyptus grandis
Eucgr.H02555 5.0kb upstream 5.0kb upstream 10560 true Chr08: 34024010-34034569 Eucalyptus grandis
Eucgr.H02555 5.0kb upstream 5.0kb upstream 5000 false Chr08: 34024010-34029009 Eucalyptus grandis
Eucgr.H02555 5.0kb downstream 5.0kb downstream 10560 true Chr08: 34029010-34039569 Eucalyptus grandis
Eucgr.H02555 5.0kb downstream 5.0kb downstream 5000 false Chr08: 34034570-34039569 Eucalyptus grandis
Eucgr.H02555 10.0kb upstream 10.0kb upstream 15560 true Chr08: 34019010-34034569 Eucalyptus grandis
Eucgr.H02555 10.0kb upstream 10.0kb upstream 10000 false Chr08: 34019010-34029009 Eucalyptus grandis
Eucgr.H02555 10.0kb downstream 10.0kb downstream 15560 true Chr08: 34029010-34044569 Eucalyptus grandis
Eucgr.H02555 10.0kb downstream 10.0kb downstream 10000 false Chr08: 34034570-34044569 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124069340 5270 Rosid View MSA
123627867 5271 Pentapetalae View MSA
122795496 5272 Eudicot View MSA
122048202 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121310882 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.718712 0.0 1.96442    
cufflinks 27.2326 0.0 61.4518   High
cufflinks 0.748137 0.0 2.0266    
cufflinks 6.66091 0.0 14.8817    
cufflinks 0.447598 0.0 1.27973 Low  
cufflinks 2.35674 0.0 5.75918    

0 Strain