Gene : Eucgr.H03254 E. grandis v2.0
Defline:  (1 of 4) PTHR12709:SF3 - DNA-DIRECTED RNA POLYMERASE IV SUBUNIT 7-RELATED Genomic Order:  3488
Name:  ? Eucgr.H03254 Secondary Identifier:  ? PAC:32043940
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

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Cufflinks Score Displayer

 

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.H03254 0.5kb upstream 0.5kb upstream 3821 true Chr08: 62888625-62892445 Eucalyptus grandis
Eucgr.H03254 0.5kb upstream 0.5kb upstream 500 false Chr08: 62891946-62892445 Eucalyptus grandis
Eucgr.H03254 0.5kb downstream 0.5kb downstream 3821 true Chr08: 62888125-62891945 Eucalyptus grandis
Eucgr.H03254 0.5kb downstream 0.5kb downstream 500 false Chr08: 62888125-62888624 Eucalyptus grandis
Eucgr.H03254 1.0kb upstream 1.0kb upstream 4321 true Chr08: 62888625-62892945 Eucalyptus grandis
Eucgr.H03254 1.0kb upstream 1.0kb upstream 1000 false Chr08: 62891946-62892945 Eucalyptus grandis
Eucgr.H03254 1.0kb downstream 1.0kb downstream 4321 true Chr08: 62887625-62891945 Eucalyptus grandis
Eucgr.H03254 1.0kb downstream 1.0kb downstream 1000 false Chr08: 62887625-62888624 Eucalyptus grandis
Eucgr.H03254 2.0kb upstream 2.0kb upstream 5321 true Chr08: 62888625-62893945 Eucalyptus grandis
Eucgr.H03254 2.0kb upstream 2.0kb upstream 2000 false Chr08: 62891946-62893945 Eucalyptus grandis
Eucgr.H03254 2.0kb downstream 2.0kb downstream 5321 true Chr08: 62886625-62891945 Eucalyptus grandis
Eucgr.H03254 2.0kb downstream 2.0kb downstream 2000 false Chr08: 62886625-62888624 Eucalyptus grandis
Eucgr.H03254 5.0kb upstream 5.0kb upstream 8321 true Chr08: 62888625-62896945 Eucalyptus grandis
Eucgr.H03254 5.0kb upstream 5.0kb upstream 5000 false Chr08: 62891946-62896945 Eucalyptus grandis
Eucgr.H03254 5.0kb downstream 5.0kb downstream 8321 true Chr08: 62883625-62891945 Eucalyptus grandis
Eucgr.H03254 5.0kb downstream 5.0kb downstream 5000 false Chr08: 62883625-62888624 Eucalyptus grandis
Eucgr.H03254 10.0kb upstream 10.0kb upstream 13321 true Chr08: 62888625-62901945 Eucalyptus grandis
Eucgr.H03254 10.0kb upstream 10.0kb upstream 10000 false Chr08: 62891946-62901945 Eucalyptus grandis
Eucgr.H03254 10.0kb downstream 10.0kb downstream 13321 true Chr08: 62878625-62891945 Eucalyptus grandis
Eucgr.H03254 10.0kb downstream 10.0kb downstream 10000 false Chr08: 62878625-62888624 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124061430 5270 Rosid View MSA
123744822 5271 Pentapetalae View MSA
122793544 5272 Eudicot View MSA
122044713 5273 Angiosperm View MSA
121351673 5274 Embryophyte View MSA
123382271 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.9191 0.0 5.56539   Low
cufflinks 6.12374 0.0 15.7342   High
cufflinks 2.88039 0.0 7.98571    
cufflinks 2.79929 0.0 7.75816    
cufflinks 5.92644 0.0 15.3172   High
cufflinks 2.54535 0.0 7.20271    

0 Strain