Gene : Eucgr.H04092 E. grandis v2.0
Defline:  (1 of 64) 3.2.1.15 - Polygalacturonase / Pectinase Genomic Order:  3086
Name:  ? Eucgr.H04092 Secondary Identifier:  ? PAC:32043159
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Egrandis PWY-1081 Eucalyptus grandis pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.H04092 0.5kb upstream 0.5kb upstream 8136 true Chr08: 55518675-55526810 Eucalyptus grandis
Eucgr.H04092 0.5kb upstream 0.5kb upstream 500 false Chr08: 55518675-55519174 Eucalyptus grandis
Eucgr.H04092 0.5kb downstream 0.5kb downstream 8136 true Chr08: 55519175-55527310 Eucalyptus grandis
Eucgr.H04092 0.5kb downstream 0.5kb downstream 500 false Chr08: 55526811-55527310 Eucalyptus grandis
Eucgr.H04092 1.0kb upstream 1.0kb upstream 8636 true Chr08: 55518175-55526810 Eucalyptus grandis
Eucgr.H04092 1.0kb upstream 1.0kb upstream 1000 false Chr08: 55518175-55519174 Eucalyptus grandis
Eucgr.H04092 1.0kb downstream 1.0kb downstream 8636 true Chr08: 55519175-55527810 Eucalyptus grandis
Eucgr.H04092 1.0kb downstream 1.0kb downstream 1000 false Chr08: 55526811-55527810 Eucalyptus grandis
Eucgr.H04092 2.0kb upstream 2.0kb upstream 9636 true Chr08: 55517175-55526810 Eucalyptus grandis
Eucgr.H04092 2.0kb upstream 2.0kb upstream 2000 false Chr08: 55517175-55519174 Eucalyptus grandis
Eucgr.H04092 2.0kb downstream 2.0kb downstream 9636 true Chr08: 55519175-55528810 Eucalyptus grandis
Eucgr.H04092 2.0kb downstream 2.0kb downstream 2000 false Chr08: 55526811-55528810 Eucalyptus grandis
Eucgr.H04092 5.0kb upstream 5.0kb upstream 12636 true Chr08: 55514175-55526810 Eucalyptus grandis
Eucgr.H04092 5.0kb upstream 5.0kb upstream 5000 false Chr08: 55514175-55519174 Eucalyptus grandis
Eucgr.H04092 5.0kb downstream 5.0kb downstream 12636 true Chr08: 55519175-55531810 Eucalyptus grandis
Eucgr.H04092 5.0kb downstream 5.0kb downstream 5000 false Chr08: 55526811-55531810 Eucalyptus grandis
Eucgr.H04092 10.0kb upstream 10.0kb upstream 17636 true Chr08: 55509175-55526810 Eucalyptus grandis
Eucgr.H04092 10.0kb upstream 10.0kb upstream 10000 false Chr08: 55509175-55519174 Eucalyptus grandis
Eucgr.H04092 10.0kb downstream 10.0kb downstream 17636 true Chr08: 55519175-55536810 Eucalyptus grandis
Eucgr.H04092 10.0kb downstream 10.0kb downstream 10000 false Chr08: 55526811-55536810 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124065487 5270 Rosid View MSA
123736627 5271 Pentapetalae View MSA
122795582 5272 Eudicot View MSA
122048646 5273 Angiosperm View MSA
121350352 5274 Embryophyte View MSA
123381691 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.73463 0.0 9.41366   High
cufflinks 3.18852 0.0 9.54825    
cufflinks 2.23316 0.0 6.05034   Low
cufflinks 2.09416 0.0 5.50974   Low
cufflinks 2.94884 0.0 7.69176    
cufflinks 2.95138 0.0 8.89755    

0 Strain