Gene : Eucgr.H03948 E. grandis v2.0
Defline:  (1 of 2) 4.2.1.55 - 3-hydroxybutyryl-CoA dehydratase / Crotonase Genomic Order:  2950
Name:  ? Eucgr.H03948 Secondary Identifier:  ? PAC:32043960
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Sequence Feature Displayer

Ontology Annotation Displayer

12 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Egrandis ILEUDEG-PWY Eucalyptus grandis pathologic  
Egrandis PWY-5136 Eucalyptus grandis pathologic  
Egrandis PWY-5137 Eucalyptus grandis pathologic  
Egrandis PWY-5138 Eucalyptus grandis pathologic  
Egrandis PWY-561 Eucalyptus grandis pathologic  
Egrandis PWY-6435 Eucalyptus grandis pathologic  
Egrandis PWY-6837 Eucalyptus grandis pathologic  
Egrandis PWY-7036 Eucalyptus grandis pathologic  
Egrandis PWY-735 Eucalyptus grandis pathologic  
Egrandis PWY-7606 Eucalyptus grandis pathologic  
Egrandis PWY-7726 Eucalyptus grandis pathologic  
Egrandis VALDEG-PWY Eucalyptus grandis pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.H03948 0.5kb upstream 0.5kb upstream 8798 true Chr08: 54000385-54009182 Eucalyptus grandis
Eucgr.H03948 0.5kb upstream 0.5kb upstream 500 false Chr08: 54008683-54009182 Eucalyptus grandis
Eucgr.H03948 0.5kb downstream 0.5kb downstream 8798 true Chr08: 53999885-54008682 Eucalyptus grandis
Eucgr.H03948 0.5kb downstream 0.5kb downstream 500 false Chr08: 53999885-54000384 Eucalyptus grandis
Eucgr.H03948 1.0kb upstream 1.0kb upstream 9298 true Chr08: 54000385-54009682 Eucalyptus grandis
Eucgr.H03948 1.0kb upstream 1.0kb upstream 1000 false Chr08: 54008683-54009682 Eucalyptus grandis
Eucgr.H03948 1.0kb downstream 1.0kb downstream 9298 true Chr08: 53999385-54008682 Eucalyptus grandis
Eucgr.H03948 1.0kb downstream 1.0kb downstream 1000 false Chr08: 53999385-54000384 Eucalyptus grandis
Eucgr.H03948 2.0kb upstream 2.0kb upstream 10298 true Chr08: 54000385-54010682 Eucalyptus grandis
Eucgr.H03948 2.0kb upstream 2.0kb upstream 2000 false Chr08: 54008683-54010682 Eucalyptus grandis
Eucgr.H03948 2.0kb downstream 2.0kb downstream 10298 true Chr08: 53998385-54008682 Eucalyptus grandis
Eucgr.H03948 2.0kb downstream 2.0kb downstream 2000 false Chr08: 53998385-54000384 Eucalyptus grandis
Eucgr.H03948 5.0kb upstream 5.0kb upstream 13298 true Chr08: 54000385-54013682 Eucalyptus grandis
Eucgr.H03948 5.0kb upstream 5.0kb upstream 5000 false Chr08: 54008683-54013682 Eucalyptus grandis
Eucgr.H03948 5.0kb downstream 5.0kb downstream 13298 true Chr08: 53995385-54008682 Eucalyptus grandis
Eucgr.H03948 5.0kb downstream 5.0kb downstream 5000 false Chr08: 53995385-54000384 Eucalyptus grandis
Eucgr.H03948 10.0kb upstream 10.0kb upstream 18298 true Chr08: 54000385-54018682 Eucalyptus grandis
Eucgr.H03948 10.0kb upstream 10.0kb upstream 10000 false Chr08: 54008683-54018682 Eucalyptus grandis
Eucgr.H03948 10.0kb downstream 10.0kb downstream 18298 true Chr08: 53990385-54008682 Eucalyptus grandis
Eucgr.H03948 10.0kb downstream 10.0kb downstream 10000 false Chr08: 53990385-54000384 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124061936 5270 Rosid View MSA
123740661 5271 Pentapetalae View MSA
122785876 5272 Eudicot View MSA
122047259 5273 Angiosperm View MSA
121345387 5274 Embryophyte View MSA
123424743 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 30.3964 0.0 85.1001 High  
cufflinks 26.41 0.0 63.4466    
cufflinks 32.1985 0.0 83.1463 High  
cufflinks 25.0375 0.0 67.8309    
cufflinks 18.7315 0.0 48.9144   Low
cufflinks 62.0967 0.0 158.81 High High

0 Strain