Gene : Eucgr.H03916 E. grandis v2.0
Defline:  (1 of 3) 6.1.1.5 - Isoleucine--tRNA ligase / Isoleucyl-tRNA synthetase Genomic Order:  2921
Name:  ? Eucgr.H03916 Secondary Identifier:  ? PAC:32044995
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Egrandis TRNA-CHARGING-PWY Eucalyptus grandis pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.H03916 0.5kb upstream 0.5kb upstream 10502 true Chr08: 53537239-53547740 Eucalyptus grandis
Eucgr.H03916 0.5kb upstream 0.5kb upstream 500 false Chr08: 53547241-53547740 Eucalyptus grandis
Eucgr.H03916 0.5kb downstream 0.5kb downstream 10502 true Chr08: 53536739-53547240 Eucalyptus grandis
Eucgr.H03916 0.5kb downstream 0.5kb downstream 500 false Chr08: 53536739-53537238 Eucalyptus grandis
Eucgr.H03916 1.0kb upstream 1.0kb upstream 11002 true Chr08: 53537239-53548240 Eucalyptus grandis
Eucgr.H03916 1.0kb upstream 1.0kb upstream 1000 false Chr08: 53547241-53548240 Eucalyptus grandis
Eucgr.H03916 1.0kb downstream 1.0kb downstream 11002 true Chr08: 53536239-53547240 Eucalyptus grandis
Eucgr.H03916 1.0kb downstream 1.0kb downstream 1000 false Chr08: 53536239-53537238 Eucalyptus grandis
Eucgr.H03916 2.0kb upstream 2.0kb upstream 12002 true Chr08: 53537239-53549240 Eucalyptus grandis
Eucgr.H03916 2.0kb upstream 2.0kb upstream 2000 false Chr08: 53547241-53549240 Eucalyptus grandis
Eucgr.H03916 2.0kb downstream 2.0kb downstream 12002 true Chr08: 53535239-53547240 Eucalyptus grandis
Eucgr.H03916 2.0kb downstream 2.0kb downstream 2000 false Chr08: 53535239-53537238 Eucalyptus grandis
Eucgr.H03916 5.0kb upstream 5.0kb upstream 15002 true Chr08: 53537239-53552240 Eucalyptus grandis
Eucgr.H03916 5.0kb upstream 5.0kb upstream 5000 false Chr08: 53547241-53552240 Eucalyptus grandis
Eucgr.H03916 5.0kb downstream 5.0kb downstream 15002 true Chr08: 53532239-53547240 Eucalyptus grandis
Eucgr.H03916 5.0kb downstream 5.0kb downstream 5000 false Chr08: 53532239-53537238 Eucalyptus grandis
Eucgr.H03916 10.0kb upstream 10.0kb upstream 20002 true Chr08: 53537239-53557240 Eucalyptus grandis
Eucgr.H03916 10.0kb upstream 10.0kb upstream 10000 false Chr08: 53547241-53557240 Eucalyptus grandis
Eucgr.H03916 10.0kb downstream 10.0kb downstream 20002 true Chr08: 53527239-53547240 Eucalyptus grandis
Eucgr.H03916 10.0kb downstream 10.0kb downstream 10000 false Chr08: 53527239-53537238 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124064635 5270 Rosid View MSA
123740769 5271 Pentapetalae View MSA
122790755 5272 Eudicot View MSA
122042566 5273 Angiosperm View MSA
121346634 5274 Embryophyte View MSA
123424788 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.23071 0.0 18.29    
cufflinks 3.59041 0.0 8.29646    
cufflinks 5.15144 0.0 11.6347    
cufflinks 1.91067 0.0 4.66135   Low
cufflinks 2.62973 0.0 6.25246    
cufflinks 10.6779 0.0 23.6375   High

0 Strain