Gene : Eucgr.H04489 E. grandis v2.0
Defline:  (1 of 235) PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Genomic Order:  3414
Name:  ? Eucgr.H04489 Secondary Identifier:  ? PAC:32042130
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.H04489 0.5kb upstream 0.5kb upstream 2050 true Chr08: 60741077-60743126 Eucalyptus grandis
Eucgr.H04489 0.5kb upstream 0.5kb upstream 500 false Chr08: 60742627-60743126 Eucalyptus grandis
Eucgr.H04489 0.5kb downstream 0.5kb downstream 2050 true Chr08: 60740577-60742626 Eucalyptus grandis
Eucgr.H04489 0.5kb downstream 0.5kb downstream 500 false Chr08: 60740577-60741076 Eucalyptus grandis
Eucgr.H04489 1.0kb upstream 1.0kb upstream 2550 true Chr08: 60741077-60743626 Eucalyptus grandis
Eucgr.H04489 1.0kb upstream 1.0kb upstream 1000 false Chr08: 60742627-60743626 Eucalyptus grandis
Eucgr.H04489 1.0kb downstream 1.0kb downstream 2550 true Chr08: 60740077-60742626 Eucalyptus grandis
Eucgr.H04489 1.0kb downstream 1.0kb downstream 1000 false Chr08: 60740077-60741076 Eucalyptus grandis
Eucgr.H04489 2.0kb upstream 2.0kb upstream 3550 true Chr08: 60741077-60744626 Eucalyptus grandis
Eucgr.H04489 2.0kb upstream 2.0kb upstream 2000 false Chr08: 60742627-60744626 Eucalyptus grandis
Eucgr.H04489 2.0kb downstream 2.0kb downstream 3550 true Chr08: 60739077-60742626 Eucalyptus grandis
Eucgr.H04489 2.0kb downstream 2.0kb downstream 2000 false Chr08: 60739077-60741076 Eucalyptus grandis
Eucgr.H04489 5.0kb upstream 5.0kb upstream 6550 true Chr08: 60741077-60747626 Eucalyptus grandis
Eucgr.H04489 5.0kb upstream 5.0kb upstream 5000 false Chr08: 60742627-60747626 Eucalyptus grandis
Eucgr.H04489 5.0kb downstream 5.0kb downstream 6550 true Chr08: 60736077-60742626 Eucalyptus grandis
Eucgr.H04489 5.0kb downstream 5.0kb downstream 5000 false Chr08: 60736077-60741076 Eucalyptus grandis
Eucgr.H04489 10.0kb upstream 10.0kb upstream 11550 true Chr08: 60741077-60752626 Eucalyptus grandis
Eucgr.H04489 10.0kb upstream 10.0kb upstream 10000 false Chr08: 60742627-60752626 Eucalyptus grandis
Eucgr.H04489 10.0kb downstream 10.0kb downstream 11550 true Chr08: 60731077-60742626 Eucalyptus grandis
Eucgr.H04489 10.0kb downstream 10.0kb downstream 10000 false Chr08: 60731077-60741076 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124066488 5270 Rosid View MSA
123753779 5271 Pentapetalae View MSA
122797667 5272 Eudicot View MSA
122051669 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351733 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.52956 0.0 4.2934    
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 1.3812 0.0 3.89884    
cufflinks 1.29271 0.0 3.65046   Low
cufflinks 1.57727 0.0 4.40587    
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed

0 Strain