Gene : Eucgr.H04428 E. grandis v2.0
Defline:  (1 of 5) 1.1.1.25 - Shikimate dehydrogenase / Shikimate:NADP(+) oxidoreductase Genomic Order:  3363
Name:  ? Eucgr.H04428 Secondary Identifier:  ? PAC:32044139
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Egrandis ARO-PWY Eucalyptus grandis pathologic  
Egrandis PWY-6163 Eucalyptus grandis pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.H04428 0.5kb upstream 0.5kb upstream 5090 true Chr08: 60058912-60064001 Eucalyptus grandis
Eucgr.H04428 0.5kb upstream 0.5kb upstream 500 false Chr08: 60058912-60059411 Eucalyptus grandis
Eucgr.H04428 0.5kb downstream 0.5kb downstream 5090 true Chr08: 60059412-60064501 Eucalyptus grandis
Eucgr.H04428 0.5kb downstream 0.5kb downstream 500 false Chr08: 60064002-60064501 Eucalyptus grandis
Eucgr.H04428 1.0kb upstream 1.0kb upstream 5590 true Chr08: 60058412-60064001 Eucalyptus grandis
Eucgr.H04428 1.0kb upstream 1.0kb upstream 1000 false Chr08: 60058412-60059411 Eucalyptus grandis
Eucgr.H04428 1.0kb downstream 1.0kb downstream 5590 true Chr08: 60059412-60065001 Eucalyptus grandis
Eucgr.H04428 1.0kb downstream 1.0kb downstream 1000 false Chr08: 60064002-60065001 Eucalyptus grandis
Eucgr.H04428 2.0kb upstream 2.0kb upstream 6590 true Chr08: 60057412-60064001 Eucalyptus grandis
Eucgr.H04428 2.0kb upstream 2.0kb upstream 2000 false Chr08: 60057412-60059411 Eucalyptus grandis
Eucgr.H04428 2.0kb downstream 2.0kb downstream 6590 true Chr08: 60059412-60066001 Eucalyptus grandis
Eucgr.H04428 2.0kb downstream 2.0kb downstream 2000 false Chr08: 60064002-60066001 Eucalyptus grandis
Eucgr.H04428 5.0kb upstream 5.0kb upstream 9590 true Chr08: 60054412-60064001 Eucalyptus grandis
Eucgr.H04428 5.0kb upstream 5.0kb upstream 5000 false Chr08: 60054412-60059411 Eucalyptus grandis
Eucgr.H04428 5.0kb downstream 5.0kb downstream 9590 true Chr08: 60059412-60069001 Eucalyptus grandis
Eucgr.H04428 5.0kb downstream 5.0kb downstream 5000 false Chr08: 60064002-60069001 Eucalyptus grandis
Eucgr.H04428 10.0kb upstream 10.0kb upstream 14590 true Chr08: 60049412-60064001 Eucalyptus grandis
Eucgr.H04428 10.0kb upstream 10.0kb upstream 10000 false Chr08: 60049412-60059411 Eucalyptus grandis
Eucgr.H04428 10.0kb downstream 10.0kb downstream 14590 true Chr08: 60059412-60074001 Eucalyptus grandis
Eucgr.H04428 10.0kb downstream 10.0kb downstream 10000 false Chr08: 60064002-60074001 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124071132 5270 Rosid View MSA
123743031 5271 Pentapetalae View MSA
122788487 5272 Eudicot View MSA
122045026 5273 Angiosperm View MSA
121345779 5274 Embryophyte View MSA
123427556 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 54.7183 0.0 143.528 High High
cufflinks 3.50397 0.0 8.68105    
cufflinks 39.5385 0.0 103.749 High High
cufflinks 2.61523 0.0 7.97825    
cufflinks 3.83338 0.0 11.8873    
cufflinks 5.97668 0.0 14.0286    

0 Strain