Gene : Eucgr.H04378 E. grandis v2.0
Defline:  (1 of 3) PTHR12143 - PEPTIDE N-GLYCANASE PNGASE -RELATED Genomic Order:  3316
Name:  ? Eucgr.H04378 Secondary Identifier:  ? PAC:32042377
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.H04378 0.5kb upstream 0.5kb upstream 7792 true Chr08: 59583076-59590867 Eucalyptus grandis
Eucgr.H04378 0.5kb upstream 0.5kb upstream 500 false Chr08: 59583076-59583575 Eucalyptus grandis
Eucgr.H04378 0.5kb downstream 0.5kb downstream 7792 true Chr08: 59583576-59591367 Eucalyptus grandis
Eucgr.H04378 0.5kb downstream 0.5kb downstream 500 false Chr08: 59590868-59591367 Eucalyptus grandis
Eucgr.H04378 1.0kb upstream 1.0kb upstream 8292 true Chr08: 59582576-59590867 Eucalyptus grandis
Eucgr.H04378 1.0kb upstream 1.0kb upstream 1000 false Chr08: 59582576-59583575 Eucalyptus grandis
Eucgr.H04378 1.0kb downstream 1.0kb downstream 8292 true Chr08: 59583576-59591867 Eucalyptus grandis
Eucgr.H04378 1.0kb downstream 1.0kb downstream 1000 false Chr08: 59590868-59591867 Eucalyptus grandis
Eucgr.H04378 2.0kb upstream 2.0kb upstream 9292 true Chr08: 59581576-59590867 Eucalyptus grandis
Eucgr.H04378 2.0kb upstream 2.0kb upstream 2000 false Chr08: 59581576-59583575 Eucalyptus grandis
Eucgr.H04378 2.0kb downstream 2.0kb downstream 9292 true Chr08: 59583576-59592867 Eucalyptus grandis
Eucgr.H04378 2.0kb downstream 2.0kb downstream 2000 false Chr08: 59590868-59592867 Eucalyptus grandis
Eucgr.H04378 5.0kb upstream 5.0kb upstream 12292 true Chr08: 59578576-59590867 Eucalyptus grandis
Eucgr.H04378 5.0kb upstream 5.0kb upstream 5000 false Chr08: 59578576-59583575 Eucalyptus grandis
Eucgr.H04378 5.0kb downstream 5.0kb downstream 12292 true Chr08: 59583576-59595867 Eucalyptus grandis
Eucgr.H04378 5.0kb downstream 5.0kb downstream 5000 false Chr08: 59590868-59595867 Eucalyptus grandis
Eucgr.H04378 10.0kb upstream 10.0kb upstream 17292 true Chr08: 59573576-59590867 Eucalyptus grandis
Eucgr.H04378 10.0kb upstream 10.0kb upstream 10000 false Chr08: 59573576-59583575 Eucalyptus grandis
Eucgr.H04378 10.0kb downstream 10.0kb downstream 17292 true Chr08: 59583576-59600867 Eucalyptus grandis
Eucgr.H04378 10.0kb downstream 10.0kb downstream 10000 false Chr08: 59590868-59600867 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124067325 5270 Rosid View MSA
123748709 5271 Pentapetalae View MSA
122792464 5272 Eudicot View MSA
122051116 5273 Angiosperm View MSA
121344308 5274 Embryophyte View MSA
123425533 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 37.323 0.0 99.3209 High  
cufflinks 28.9621 0.0 74.5167    
cufflinks 41.6421 0.0 99.6131 High High
cufflinks 26.9547 0.0 68.8183    
cufflinks 18.801 0.0 49.3734   Low
cufflinks 33.3617 0.0 80.2354    

0 Strain