Gene : Eucgr.H04255 E. grandis v2.0
Defline:  (1 of 235) PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Genomic Order:  3224
Name:  ? Eucgr.H04255 Secondary Identifier:  ? PAC:32041191
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.H04255 0.5kb upstream 0.5kb upstream 2825 true Chr08: 57310386-57313210 Eucalyptus grandis
Eucgr.H04255 0.5kb upstream 0.5kb upstream 500 false Chr08: 57310386-57310885 Eucalyptus grandis
Eucgr.H04255 0.5kb downstream 0.5kb downstream 2825 true Chr08: 57310886-57313710 Eucalyptus grandis
Eucgr.H04255 0.5kb downstream 0.5kb downstream 500 false Chr08: 57313211-57313710 Eucalyptus grandis
Eucgr.H04255 1.0kb upstream 1.0kb upstream 3325 true Chr08: 57309886-57313210 Eucalyptus grandis
Eucgr.H04255 1.0kb upstream 1.0kb upstream 1000 false Chr08: 57309886-57310885 Eucalyptus grandis
Eucgr.H04255 1.0kb downstream 1.0kb downstream 3325 true Chr08: 57310886-57314210 Eucalyptus grandis
Eucgr.H04255 1.0kb downstream 1.0kb downstream 1000 false Chr08: 57313211-57314210 Eucalyptus grandis
Eucgr.H04255 2.0kb upstream 2.0kb upstream 4325 true Chr08: 57308886-57313210 Eucalyptus grandis
Eucgr.H04255 2.0kb upstream 2.0kb upstream 2000 false Chr08: 57308886-57310885 Eucalyptus grandis
Eucgr.H04255 2.0kb downstream 2.0kb downstream 4325 true Chr08: 57310886-57315210 Eucalyptus grandis
Eucgr.H04255 2.0kb downstream 2.0kb downstream 2000 false Chr08: 57313211-57315210 Eucalyptus grandis
Eucgr.H04255 5.0kb upstream 5.0kb upstream 7325 true Chr08: 57305886-57313210 Eucalyptus grandis
Eucgr.H04255 5.0kb upstream 5.0kb upstream 5000 false Chr08: 57305886-57310885 Eucalyptus grandis
Eucgr.H04255 5.0kb downstream 5.0kb downstream 7325 true Chr08: 57310886-57318210 Eucalyptus grandis
Eucgr.H04255 5.0kb downstream 5.0kb downstream 5000 false Chr08: 57313211-57318210 Eucalyptus grandis
Eucgr.H04255 10.0kb upstream 10.0kb upstream 12325 true Chr08: 57300886-57313210 Eucalyptus grandis
Eucgr.H04255 10.0kb upstream 10.0kb upstream 10000 false Chr08: 57300886-57310885 Eucalyptus grandis
Eucgr.H04255 10.0kb downstream 10.0kb downstream 12325 true Chr08: 57310886-57323210 Eucalyptus grandis
Eucgr.H04255 10.0kb downstream 10.0kb downstream 10000 false Chr08: 57313211-57323210 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124069931 5270 Rosid View MSA
123753779 5271 Pentapetalae View MSA
122797667 5272 Eudicot View MSA
122051669 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351733 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.556216 0.0 1.64958   High
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.359482 0.0 1.12098 Low  
cufflinks 0.251068 0.0 0.816566 Low  
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed

0 Strain