Gene : Eucgr.H04235 E. grandis v2.0
Defline:  (1 of 4) PTHR31165:SF13 - PROTEIN LIGHT-DEPENDENT SHORT HYPOCOTYLS 1-RELATED Genomic Order:  3209
Name:  ? Eucgr.H04235 Secondary Identifier:  ? PAC:32045116
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.H04235 0.5kb upstream 0.5kb upstream 2354 true Chr08: 57091755-57094108 Eucalyptus grandis
Eucgr.H04235 0.5kb upstream 0.5kb upstream 500 false Chr08: 57093609-57094108 Eucalyptus grandis
Eucgr.H04235 0.5kb downstream 0.5kb downstream 2354 true Chr08: 57091255-57093608 Eucalyptus grandis
Eucgr.H04235 0.5kb downstream 0.5kb downstream 500 false Chr08: 57091255-57091754 Eucalyptus grandis
Eucgr.H04235 1.0kb upstream 1.0kb upstream 2854 true Chr08: 57091755-57094608 Eucalyptus grandis
Eucgr.H04235 1.0kb upstream 1.0kb upstream 1000 false Chr08: 57093609-57094608 Eucalyptus grandis
Eucgr.H04235 1.0kb downstream 1.0kb downstream 2854 true Chr08: 57090755-57093608 Eucalyptus grandis
Eucgr.H04235 1.0kb downstream 1.0kb downstream 1000 false Chr08: 57090755-57091754 Eucalyptus grandis
Eucgr.H04235 2.0kb upstream 2.0kb upstream 3854 true Chr08: 57091755-57095608 Eucalyptus grandis
Eucgr.H04235 2.0kb upstream 2.0kb upstream 2000 false Chr08: 57093609-57095608 Eucalyptus grandis
Eucgr.H04235 2.0kb downstream 2.0kb downstream 3854 true Chr08: 57089755-57093608 Eucalyptus grandis
Eucgr.H04235 2.0kb downstream 2.0kb downstream 2000 false Chr08: 57089755-57091754 Eucalyptus grandis
Eucgr.H04235 5.0kb upstream 5.0kb upstream 6854 true Chr08: 57091755-57098608 Eucalyptus grandis
Eucgr.H04235 5.0kb upstream 5.0kb upstream 5000 false Chr08: 57093609-57098608 Eucalyptus grandis
Eucgr.H04235 5.0kb downstream 5.0kb downstream 6854 true Chr08: 57086755-57093608 Eucalyptus grandis
Eucgr.H04235 5.0kb downstream 5.0kb downstream 5000 false Chr08: 57086755-57091754 Eucalyptus grandis
Eucgr.H04235 10.0kb upstream 10.0kb upstream 11854 true Chr08: 57091755-57103608 Eucalyptus grandis
Eucgr.H04235 10.0kb upstream 10.0kb upstream 10000 false Chr08: 57093609-57103608 Eucalyptus grandis
Eucgr.H04235 10.0kb downstream 10.0kb downstream 11854 true Chr08: 57081755-57093608 Eucalyptus grandis
Eucgr.H04235 10.0kb downstream 10.0kb downstream 10000 false Chr08: 57081755-57091754 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124063298 5270 Rosid View MSA
123753170 5271 Pentapetalae View MSA
122789282 5272 Eudicot View MSA
122049887 5273 Angiosperm View MSA
121351474 5274 Embryophyte View MSA
123382179 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.60283 0.0 4.45531   Low
cufflinks 8.94884 0.0 20.9245    
cufflinks 11.1595 0.0 25.7541    
cufflinks 8.27856 0.0 19.5431    
cufflinks 23.381 0.0 51.9232   High
cufflinks 2.7234 0.0 7.19066    

0 Strain