Gene : Eucgr.H04746 E. grandis v2.0
Defline:  (1 of 2) PTHR22808 - NCL1 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING Genomic Order:  3749
Name:  ? Eucgr.H04746 Secondary Identifier:  ? PAC:32043935
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Egrandis PWY-6829 Eucalyptus grandis pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.H04746 0.5kb upstream 0.5kb upstream 9082 true Chr08: 66455892-66464973 Eucalyptus grandis
Eucgr.H04746 0.5kb upstream 0.5kb upstream 500 false Chr08: 66455892-66456391 Eucalyptus grandis
Eucgr.H04746 0.5kb downstream 0.5kb downstream 9082 true Chr08: 66456392-66465473 Eucalyptus grandis
Eucgr.H04746 0.5kb downstream 0.5kb downstream 500 false Chr08: 66464974-66465473 Eucalyptus grandis
Eucgr.H04746 1.0kb upstream 1.0kb upstream 9582 true Chr08: 66455392-66464973 Eucalyptus grandis
Eucgr.H04746 1.0kb upstream 1.0kb upstream 1000 false Chr08: 66455392-66456391 Eucalyptus grandis
Eucgr.H04746 1.0kb downstream 1.0kb downstream 9582 true Chr08: 66456392-66465973 Eucalyptus grandis
Eucgr.H04746 1.0kb downstream 1.0kb downstream 1000 false Chr08: 66464974-66465973 Eucalyptus grandis
Eucgr.H04746 2.0kb upstream 2.0kb upstream 10582 true Chr08: 66454392-66464973 Eucalyptus grandis
Eucgr.H04746 2.0kb upstream 2.0kb upstream 2000 false Chr08: 66454392-66456391 Eucalyptus grandis
Eucgr.H04746 2.0kb downstream 2.0kb downstream 10582 true Chr08: 66456392-66466973 Eucalyptus grandis
Eucgr.H04746 2.0kb downstream 2.0kb downstream 2000 false Chr08: 66464974-66466973 Eucalyptus grandis
Eucgr.H04746 5.0kb upstream 5.0kb upstream 13582 true Chr08: 66451392-66464973 Eucalyptus grandis
Eucgr.H04746 5.0kb upstream 5.0kb upstream 5000 false Chr08: 66451392-66456391 Eucalyptus grandis
Eucgr.H04746 5.0kb downstream 5.0kb downstream 13582 true Chr08: 66456392-66469973 Eucalyptus grandis
Eucgr.H04746 5.0kb downstream 5.0kb downstream 5000 false Chr08: 66464974-66469973 Eucalyptus grandis
Eucgr.H04746 10.0kb upstream 10.0kb upstream 18582 true Chr08: 66446392-66464973 Eucalyptus grandis
Eucgr.H04746 10.0kb upstream 10.0kb upstream 10000 false Chr08: 66446392-66456391 Eucalyptus grandis
Eucgr.H04746 10.0kb downstream 10.0kb downstream 18582 true Chr08: 66456392-66474973 Eucalyptus grandis
Eucgr.H04746 10.0kb downstream 10.0kb downstream 10000 false Chr08: 66464974-66474973 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124062723 5270 Rosid View MSA
123742505 5271 Pentapetalae View MSA
122793605 5272 Eudicot View MSA
122043899 5273 Angiosperm View MSA
121349940 5274 Embryophyte View MSA
123426394 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 12.5528 0.0 33.0894    
cufflinks 6.06417 0.0 14.3646   Low
cufflinks 13.1175 0.0 33.4052    
cufflinks 5.94509 0.0 14.1353   Low
cufflinks 8.69232 0.0 19.918    
cufflinks 11.9232 0.0 26.7622    

0 Strain