Gene : Eucgr.H04672 E. grandis v2.0
Defline:  (1 of 33) PF01535//PF12854//PF13041 - PPR repeat (PPR) // PPR repeat (PPR_1) // PPR repeat family (PPR_2) Genomic Order:  3686
Name:  ? Eucgr.H04672 Secondary Identifier:  ? PAC:32043698
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.H04672 0.5kb upstream 0.5kb upstream 2687 true Chr08: 65575328-65578014 Eucalyptus grandis
Eucgr.H04672 0.5kb upstream 0.5kb upstream 500 false Chr08: 65577515-65578014 Eucalyptus grandis
Eucgr.H04672 0.5kb downstream 0.5kb downstream 2687 true Chr08: 65574828-65577514 Eucalyptus grandis
Eucgr.H04672 0.5kb downstream 0.5kb downstream 500 false Chr08: 65574828-65575327 Eucalyptus grandis
Eucgr.H04672 1.0kb upstream 1.0kb upstream 3187 true Chr08: 65575328-65578514 Eucalyptus grandis
Eucgr.H04672 1.0kb upstream 1.0kb upstream 1000 false Chr08: 65577515-65578514 Eucalyptus grandis
Eucgr.H04672 1.0kb downstream 1.0kb downstream 3187 true Chr08: 65574328-65577514 Eucalyptus grandis
Eucgr.H04672 1.0kb downstream 1.0kb downstream 1000 false Chr08: 65574328-65575327 Eucalyptus grandis
Eucgr.H04672 2.0kb upstream 2.0kb upstream 4187 true Chr08: 65575328-65579514 Eucalyptus grandis
Eucgr.H04672 2.0kb upstream 2.0kb upstream 2000 false Chr08: 65577515-65579514 Eucalyptus grandis
Eucgr.H04672 2.0kb downstream 2.0kb downstream 4187 true Chr08: 65573328-65577514 Eucalyptus grandis
Eucgr.H04672 2.0kb downstream 2.0kb downstream 2000 false Chr08: 65573328-65575327 Eucalyptus grandis
Eucgr.H04672 5.0kb upstream 5.0kb upstream 7187 true Chr08: 65575328-65582514 Eucalyptus grandis
Eucgr.H04672 5.0kb upstream 5.0kb upstream 5000 false Chr08: 65577515-65582514 Eucalyptus grandis
Eucgr.H04672 5.0kb downstream 5.0kb downstream 7187 true Chr08: 65570328-65577514 Eucalyptus grandis
Eucgr.H04672 5.0kb downstream 5.0kb downstream 5000 false Chr08: 65570328-65575327 Eucalyptus grandis
Eucgr.H04672 10.0kb upstream 10.0kb upstream 12187 true Chr08: 65575328-65587514 Eucalyptus grandis
Eucgr.H04672 10.0kb upstream 10.0kb upstream 10000 false Chr08: 65577515-65587514 Eucalyptus grandis
Eucgr.H04672 10.0kb downstream 10.0kb downstream 12187 true Chr08: 65565328-65577514 Eucalyptus grandis
Eucgr.H04672 10.0kb downstream 10.0kb downstream 10000 false Chr08: 65565328-65575327 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124060677 5270 Rosid View MSA
123746655 5271 Pentapetalae View MSA
122793179 5272 Eudicot View MSA
122051419 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351195 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.56146 0.0 4.18962    
cufflinks 2.30923 0.0 5.95525    
cufflinks 1.36598 0.0 3.71391   Low
cufflinks 2.59675 0.0 6.61422   High
cufflinks 1.76635 0.0 4.69793    
cufflinks 2.1341 0.0 5.55647    

0 Strain