Gene : Eucgr.H04678 E. grandis v2.0
Defline:  (1 of 2) PF09588 - YqaJ-like viral recombinase domain (YqaJ) Genomic Order:  3692
Name:  ? Eucgr.H04678 Secondary Identifier:  ? PAC:32042525
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.H04678 0.5kb upstream 0.5kb upstream 3722 true Chr08: 65684836-65688557 Eucalyptus grandis
Eucgr.H04678 0.5kb upstream 0.5kb upstream 500 false Chr08: 65684836-65685335 Eucalyptus grandis
Eucgr.H04678 0.5kb downstream 0.5kb downstream 3722 true Chr08: 65685336-65689057 Eucalyptus grandis
Eucgr.H04678 0.5kb downstream 0.5kb downstream 500 false Chr08: 65688558-65689057 Eucalyptus grandis
Eucgr.H04678 1.0kb upstream 1.0kb upstream 4222 true Chr08: 65684336-65688557 Eucalyptus grandis
Eucgr.H04678 1.0kb upstream 1.0kb upstream 1000 false Chr08: 65684336-65685335 Eucalyptus grandis
Eucgr.H04678 1.0kb downstream 1.0kb downstream 4222 true Chr08: 65685336-65689557 Eucalyptus grandis
Eucgr.H04678 1.0kb downstream 1.0kb downstream 1000 false Chr08: 65688558-65689557 Eucalyptus grandis
Eucgr.H04678 2.0kb upstream 2.0kb upstream 5222 true Chr08: 65683336-65688557 Eucalyptus grandis
Eucgr.H04678 2.0kb upstream 2.0kb upstream 2000 false Chr08: 65683336-65685335 Eucalyptus grandis
Eucgr.H04678 2.0kb downstream 2.0kb downstream 5222 true Chr08: 65685336-65690557 Eucalyptus grandis
Eucgr.H04678 2.0kb downstream 2.0kb downstream 2000 false Chr08: 65688558-65690557 Eucalyptus grandis
Eucgr.H04678 5.0kb upstream 5.0kb upstream 8222 true Chr08: 65680336-65688557 Eucalyptus grandis
Eucgr.H04678 5.0kb upstream 5.0kb upstream 5000 false Chr08: 65680336-65685335 Eucalyptus grandis
Eucgr.H04678 5.0kb downstream 5.0kb downstream 8222 true Chr08: 65685336-65693557 Eucalyptus grandis
Eucgr.H04678 5.0kb downstream 5.0kb downstream 5000 false Chr08: 65688558-65693557 Eucalyptus grandis
Eucgr.H04678 10.0kb upstream 10.0kb upstream 13222 true Chr08: 65675336-65688557 Eucalyptus grandis
Eucgr.H04678 10.0kb upstream 10.0kb upstream 10000 false Chr08: 65675336-65685335 Eucalyptus grandis
Eucgr.H04678 10.0kb downstream 10.0kb downstream 13222 true Chr08: 65685336-65698557 Eucalyptus grandis
Eucgr.H04678 10.0kb downstream 10.0kb downstream 10000 false Chr08: 65688558-65698557 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124064584 5270 Rosid View MSA
123738180 5271 Pentapetalae View MSA
122790598 5272 Eudicot View MSA
122045989 5273 Angiosperm View MSA
123429076 5275 Viridiplantae View MSA
121346090 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.31516 0.0 28.4001    
cufflinks 8.08623 0.0 23.327    
cufflinks 8.05784 0.0 22.0727    
cufflinks 10.0639 0.0 23.3708    
cufflinks 7.96895 0.0 22.551    
cufflinks 13.4769 0.0 33.8173   High

0 Strain