Gene : Eucgr.I00127 E. grandis v2.0
Defline:  (1 of 6) 6.1.1.3 - Threonine--tRNA ligase / Threonyl-tRNA synthetase Genomic Order:  99
Name:  ? Eucgr.I00127 Secondary Identifier:  ? PAC:32063181
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Egrandis TRNA-CHARGING-PWY Eucalyptus grandis pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.I00127 0.5kb upstream 0.5kb upstream 8009 true Chr09: 2803104-2811112 Eucalyptus grandis
Eucgr.I00127 0.5kb upstream 0.5kb upstream 500 false Chr09: 2810613-2811112 Eucalyptus grandis
Eucgr.I00127 0.5kb downstream 0.5kb downstream 8009 true Chr09: 2802604-2810612 Eucalyptus grandis
Eucgr.I00127 0.5kb downstream 0.5kb downstream 500 false Chr09: 2802604-2803103 Eucalyptus grandis
Eucgr.I00127 1.0kb upstream 1.0kb upstream 8509 true Chr09: 2803104-2811612 Eucalyptus grandis
Eucgr.I00127 1.0kb upstream 1.0kb upstream 1000 false Chr09: 2810613-2811612 Eucalyptus grandis
Eucgr.I00127 1.0kb downstream 1.0kb downstream 8509 true Chr09: 2802104-2810612 Eucalyptus grandis
Eucgr.I00127 1.0kb downstream 1.0kb downstream 1000 false Chr09: 2802104-2803103 Eucalyptus grandis
Eucgr.I00127 2.0kb upstream 2.0kb upstream 9509 true Chr09: 2803104-2812612 Eucalyptus grandis
Eucgr.I00127 2.0kb upstream 2.0kb upstream 2000 false Chr09: 2810613-2812612 Eucalyptus grandis
Eucgr.I00127 2.0kb downstream 2.0kb downstream 9509 true Chr09: 2801104-2810612 Eucalyptus grandis
Eucgr.I00127 2.0kb downstream 2.0kb downstream 2000 false Chr09: 2801104-2803103 Eucalyptus grandis
Eucgr.I00127 5.0kb upstream 5.0kb upstream 12509 true Chr09: 2803104-2815612 Eucalyptus grandis
Eucgr.I00127 5.0kb upstream 5.0kb upstream 5000 false Chr09: 2810613-2815612 Eucalyptus grandis
Eucgr.I00127 5.0kb downstream 5.0kb downstream 12509 true Chr09: 2798104-2810612 Eucalyptus grandis
Eucgr.I00127 5.0kb downstream 5.0kb downstream 5000 false Chr09: 2798104-2803103 Eucalyptus grandis
Eucgr.I00127 10.0kb upstream 10.0kb upstream 17509 true Chr09: 2803104-2820612 Eucalyptus grandis
Eucgr.I00127 10.0kb upstream 10.0kb upstream 10000 false Chr09: 2810613-2820612 Eucalyptus grandis
Eucgr.I00127 10.0kb downstream 10.0kb downstream 17509 true Chr09: 2793104-2810612 Eucalyptus grandis
Eucgr.I00127 10.0kb downstream 10.0kb downstream 10000 false Chr09: 2793104-2803103 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124062778 5270 Rosid View MSA
123739350 5271 Pentapetalae View MSA
122793542 5272 Eudicot View MSA
122044606 5273 Angiosperm View MSA
121343894 5274 Embryophyte View MSA
123425201 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.08291 0.0 14.7142    
cufflinks 4.72296 0.0 11.6365    
cufflinks 6.4891 0.0 15.538    
cufflinks 6.57255 0.0 15.6341    
cufflinks 2.82207 0.0 7.34486   Low
cufflinks 12.344 0.0 28.2224   High

0 Strain