Gene : Eucgr.I00129 E. grandis v2.0
Defline:  (1 of 33) PF01535//PF12854//PF13041 - PPR repeat (PPR) // PPR repeat (PPR_1) // PPR repeat family (PPR_2) Genomic Order:  100
Name:  ? Eucgr.I00129 Secondary Identifier:  ? PAC:32064585
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.I00129 0.5kb upstream 0.5kb upstream 2162 true Chr09: 2828063-2830224 Eucalyptus grandis
Eucgr.I00129 0.5kb upstream 0.5kb upstream 500 false Chr09: 2828063-2828562 Eucalyptus grandis
Eucgr.I00129 0.5kb downstream 0.5kb downstream 2162 true Chr09: 2828563-2830724 Eucalyptus grandis
Eucgr.I00129 0.5kb downstream 0.5kb downstream 500 false Chr09: 2830225-2830724 Eucalyptus grandis
Eucgr.I00129 1.0kb upstream 1.0kb upstream 2662 true Chr09: 2827563-2830224 Eucalyptus grandis
Eucgr.I00129 1.0kb upstream 1.0kb upstream 1000 false Chr09: 2827563-2828562 Eucalyptus grandis
Eucgr.I00129 1.0kb downstream 1.0kb downstream 2662 true Chr09: 2828563-2831224 Eucalyptus grandis
Eucgr.I00129 1.0kb downstream 1.0kb downstream 1000 false Chr09: 2830225-2831224 Eucalyptus grandis
Eucgr.I00129 2.0kb upstream 2.0kb upstream 3662 true Chr09: 2826563-2830224 Eucalyptus grandis
Eucgr.I00129 2.0kb upstream 2.0kb upstream 2000 false Chr09: 2826563-2828562 Eucalyptus grandis
Eucgr.I00129 2.0kb downstream 2.0kb downstream 3662 true Chr09: 2828563-2832224 Eucalyptus grandis
Eucgr.I00129 2.0kb downstream 2.0kb downstream 2000 false Chr09: 2830225-2832224 Eucalyptus grandis
Eucgr.I00129 5.0kb upstream 5.0kb upstream 6662 true Chr09: 2823563-2830224 Eucalyptus grandis
Eucgr.I00129 5.0kb upstream 5.0kb upstream 5000 false Chr09: 2823563-2828562 Eucalyptus grandis
Eucgr.I00129 5.0kb downstream 5.0kb downstream 6662 true Chr09: 2828563-2835224 Eucalyptus grandis
Eucgr.I00129 5.0kb downstream 5.0kb downstream 5000 false Chr09: 2830225-2835224 Eucalyptus grandis
Eucgr.I00129 10.0kb upstream 10.0kb upstream 11662 true Chr09: 2818563-2830224 Eucalyptus grandis
Eucgr.I00129 10.0kb upstream 10.0kb upstream 10000 false Chr09: 2818563-2828562 Eucalyptus grandis
Eucgr.I00129 10.0kb downstream 10.0kb downstream 11662 true Chr09: 2828563-2840224 Eucalyptus grandis
Eucgr.I00129 10.0kb downstream 10.0kb downstream 10000 false Chr09: 2830225-2840224 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124072513 5270 Rosid View MSA
123747473 5271 Pentapetalae View MSA
122794645 5272 Eudicot View MSA
122051419 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351195 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.986973 0.0 2.87735    
cufflinks 0.37846 0.0 1.21844 Low  
cufflinks 0.901676 0.0 2.63413    
cufflinks 0.116046 0.0 0.437231 Low Low
cufflinks 0.831848 0.0 2.45398    
cufflinks 0.961795 0.0 2.84363    

0 Strain