Gene : Eucgr.I00122 E. grandis v2.0
Defline:  (1 of 4) PTHR13215 - RNA POLYMERASE II TRANSCRIPTIONAL COACTIVATOR Genomic Order:  95
Name:  ? Eucgr.I00122 Secondary Identifier:  ? PAC:32065228
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.I00122 0.5kb upstream 0.5kb upstream 2578 true Chr09: 2687082-2689659 Eucalyptus grandis
Eucgr.I00122 0.5kb upstream 0.5kb upstream 500 false Chr09: 2689160-2689659 Eucalyptus grandis
Eucgr.I00122 0.5kb downstream 0.5kb downstream 2578 true Chr09: 2686582-2689159 Eucalyptus grandis
Eucgr.I00122 0.5kb downstream 0.5kb downstream 500 false Chr09: 2686582-2687081 Eucalyptus grandis
Eucgr.I00122 1.0kb upstream 1.0kb upstream 3078 true Chr09: 2687082-2690159 Eucalyptus grandis
Eucgr.I00122 1.0kb upstream 1.0kb upstream 1000 false Chr09: 2689160-2690159 Eucalyptus grandis
Eucgr.I00122 1.0kb downstream 1.0kb downstream 3078 true Chr09: 2686082-2689159 Eucalyptus grandis
Eucgr.I00122 1.0kb downstream 1.0kb downstream 1000 false Chr09: 2686082-2687081 Eucalyptus grandis
Eucgr.I00122 2.0kb upstream 2.0kb upstream 4078 true Chr09: 2687082-2691159 Eucalyptus grandis
Eucgr.I00122 2.0kb upstream 2.0kb upstream 2000 false Chr09: 2689160-2691159 Eucalyptus grandis
Eucgr.I00122 2.0kb downstream 2.0kb downstream 4078 true Chr09: 2685082-2689159 Eucalyptus grandis
Eucgr.I00122 2.0kb downstream 2.0kb downstream 2000 false Chr09: 2685082-2687081 Eucalyptus grandis
Eucgr.I00122 5.0kb upstream 5.0kb upstream 7078 true Chr09: 2687082-2694159 Eucalyptus grandis
Eucgr.I00122 5.0kb upstream 5.0kb upstream 5000 false Chr09: 2689160-2694159 Eucalyptus grandis
Eucgr.I00122 5.0kb downstream 5.0kb downstream 7078 true Chr09: 2682082-2689159 Eucalyptus grandis
Eucgr.I00122 5.0kb downstream 5.0kb downstream 5000 false Chr09: 2682082-2687081 Eucalyptus grandis
Eucgr.I00122 10.0kb upstream 10.0kb upstream 12078 true Chr09: 2687082-2699159 Eucalyptus grandis
Eucgr.I00122 10.0kb upstream 10.0kb upstream 10000 false Chr09: 2689160-2699159 Eucalyptus grandis
Eucgr.I00122 10.0kb downstream 10.0kb downstream 12078 true Chr09: 2677082-2689159 Eucalyptus grandis
Eucgr.I00122 10.0kb downstream 10.0kb downstream 10000 false Chr09: 2677082-2687081 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124067021 5270 Rosid View MSA
123736875 5271 Pentapetalae View MSA
122796364 5272 Eudicot View MSA
122048027 5273 Angiosperm View MSA
121344440 5274 Embryophyte View MSA
123380043 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 34.2683 0.0 77.428 High  
cufflinks 35.1979 0.0 79.4036    
cufflinks 40.0773 0.0 89.9858 High  
cufflinks 30.5998 0.0 69.7649    
cufflinks 67.1533 0.0 148.657 High High
cufflinks 32.3116 0.0 73.2274    

0 Strain