Gene : Eucgr.I00023 E. grandis v2.0
Defline:  (1 of 1) PF02900 - Catalytic LigB subunit of aromatic ring-opening dioxygenase (LigB) Genomic Order:  21
Name:  ? Eucgr.I00023 Secondary Identifier:  ? PAC:32065596
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.I00023 0.5kb upstream 0.5kb upstream 3081 true Chr09: 268745-271825 Eucalyptus grandis
Eucgr.I00023 0.5kb upstream 0.5kb upstream 500 false Chr09: 271326-271825 Eucalyptus grandis
Eucgr.I00023 0.5kb downstream 0.5kb downstream 3081 true Chr09: 268245-271325 Eucalyptus grandis
Eucgr.I00023 0.5kb downstream 0.5kb downstream 500 false Chr09: 268245-268744 Eucalyptus grandis
Eucgr.I00023 1.0kb upstream 1.0kb upstream 3581 true Chr09: 268745-272325 Eucalyptus grandis
Eucgr.I00023 1.0kb upstream 1.0kb upstream 1000 false Chr09: 271326-272325 Eucalyptus grandis
Eucgr.I00023 1.0kb downstream 1.0kb downstream 3581 true Chr09: 267745-271325 Eucalyptus grandis
Eucgr.I00023 1.0kb downstream 1.0kb downstream 1000 false Chr09: 267745-268744 Eucalyptus grandis
Eucgr.I00023 2.0kb upstream 2.0kb upstream 4581 true Chr09: 268745-273325 Eucalyptus grandis
Eucgr.I00023 2.0kb upstream 2.0kb upstream 2000 false Chr09: 271326-273325 Eucalyptus grandis
Eucgr.I00023 2.0kb downstream 2.0kb downstream 4581 true Chr09: 266745-271325 Eucalyptus grandis
Eucgr.I00023 2.0kb downstream 2.0kb downstream 2000 false Chr09: 266745-268744 Eucalyptus grandis
Eucgr.I00023 5.0kb upstream 5.0kb upstream 7581 true Chr09: 268745-276325 Eucalyptus grandis
Eucgr.I00023 5.0kb upstream 5.0kb upstream 5000 false Chr09: 271326-276325 Eucalyptus grandis
Eucgr.I00023 5.0kb downstream 5.0kb downstream 7581 true Chr09: 263745-271325 Eucalyptus grandis
Eucgr.I00023 5.0kb downstream 5.0kb downstream 5000 false Chr09: 263745-268744 Eucalyptus grandis
Eucgr.I00023 10.0kb upstream 10.0kb upstream 12581 true Chr09: 268745-281325 Eucalyptus grandis
Eucgr.I00023 10.0kb upstream 10.0kb upstream 10000 false Chr09: 271326-281325 Eucalyptus grandis
Eucgr.I00023 10.0kb downstream 10.0kb downstream 12581 true Chr09: 258745-271325 Eucalyptus grandis
Eucgr.I00023 10.0kb downstream 10.0kb downstream 10000 false Chr09: 258745-268744 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124061164 5270 Rosid View MSA
123748112 5271 Pentapetalae View MSA
122788148 5272 Eudicot View MSA
122046323 5273 Angiosperm View MSA
121350065 5274 Embryophyte View MSA
123426386 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 15.2854 0.0 35.5715    
cufflinks 63.0769 0.0 139.637 High High
cufflinks 20.5638 0.0 46.8623    
cufflinks 26.3108 0.0 59.1152    
cufflinks 12.1597 0.0 28.8472    
cufflinks 10.9406 0.0 26.198    

0 Strain