Gene : Eucgr.I00566 E. grandis v2.0
Defline:  (1 of 3) 2.2.1.7 - 1-deoxy-D-xylulose-5-phosphate synthase / DXP-synthase Genomic Order:  452
Name:  ? Eucgr.I00566 Secondary Identifier:  ? PAC:32062668
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Egrandis PWY-7560 Eucalyptus grandis pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.I00566 0.5kb upstream 0.5kb upstream 4277 true Chr09: 11405062-11409338 Eucalyptus grandis
Eucgr.I00566 0.5kb upstream 0.5kb upstream 500 false Chr09: 11408839-11409338 Eucalyptus grandis
Eucgr.I00566 0.5kb downstream 0.5kb downstream 4277 true Chr09: 11404562-11408838 Eucalyptus grandis
Eucgr.I00566 0.5kb downstream 0.5kb downstream 500 false Chr09: 11404562-11405061 Eucalyptus grandis
Eucgr.I00566 1.0kb upstream 1.0kb upstream 4777 true Chr09: 11405062-11409838 Eucalyptus grandis
Eucgr.I00566 1.0kb upstream 1.0kb upstream 1000 false Chr09: 11408839-11409838 Eucalyptus grandis
Eucgr.I00566 1.0kb downstream 1.0kb downstream 4777 true Chr09: 11404062-11408838 Eucalyptus grandis
Eucgr.I00566 1.0kb downstream 1.0kb downstream 1000 false Chr09: 11404062-11405061 Eucalyptus grandis
Eucgr.I00566 2.0kb upstream 2.0kb upstream 5777 true Chr09: 11405062-11410838 Eucalyptus grandis
Eucgr.I00566 2.0kb upstream 2.0kb upstream 2000 false Chr09: 11408839-11410838 Eucalyptus grandis
Eucgr.I00566 2.0kb downstream 2.0kb downstream 5777 true Chr09: 11403062-11408838 Eucalyptus grandis
Eucgr.I00566 2.0kb downstream 2.0kb downstream 2000 false Chr09: 11403062-11405061 Eucalyptus grandis
Eucgr.I00566 5.0kb upstream 5.0kb upstream 8777 true Chr09: 11405062-11413838 Eucalyptus grandis
Eucgr.I00566 5.0kb upstream 5.0kb upstream 5000 false Chr09: 11408839-11413838 Eucalyptus grandis
Eucgr.I00566 5.0kb downstream 5.0kb downstream 8777 true Chr09: 11400062-11408838 Eucalyptus grandis
Eucgr.I00566 5.0kb downstream 5.0kb downstream 5000 false Chr09: 11400062-11405061 Eucalyptus grandis
Eucgr.I00566 10.0kb upstream 10.0kb upstream 13777 true Chr09: 11405062-11418838 Eucalyptus grandis
Eucgr.I00566 10.0kb upstream 10.0kb upstream 10000 false Chr09: 11408839-11418838 Eucalyptus grandis
Eucgr.I00566 10.0kb downstream 10.0kb downstream 13777 true Chr09: 11395062-11408838 Eucalyptus grandis
Eucgr.I00566 10.0kb downstream 10.0kb downstream 10000 false Chr09: 11395062-11405061 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124070864 5270 Rosid View MSA
123742318 5271 Pentapetalae View MSA
122794630 5272 Eudicot View MSA
122048955 5273 Angiosperm View MSA
121351194 5274 Embryophyte View MSA
123428527 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 78.1495 0.0 184.765 High  
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 83.3482 0.0 197.637 High  
cufflinks 0.301969 0.0 0.946245 Low Low
cufflinks 1.31377 0.0 3.50189    
cufflinks 29.6075 0.0 65.9766    

0 Strain