Gene : Eucgr.I00342 E. grandis v2.0
Defline:  (1 of 53) PF01535//PF13041//PF13812 - PPR repeat (PPR) // PPR repeat family (PPR_2) // Pentatricopeptide repeat domain (PPR_3) Genomic Order:  279
Name:  ? Eucgr.I00342 Secondary Identifier:  ? PAC:32065343
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.I00342 0.5kb upstream 0.5kb upstream 4203 true Chr09: 6463495-6467697 Eucalyptus grandis
Eucgr.I00342 0.5kb upstream 0.5kb upstream 500 false Chr09: 6463495-6463994 Eucalyptus grandis
Eucgr.I00342 0.5kb downstream 0.5kb downstream 4203 true Chr09: 6463995-6468197 Eucalyptus grandis
Eucgr.I00342 0.5kb downstream 0.5kb downstream 500 false Chr09: 6467698-6468197 Eucalyptus grandis
Eucgr.I00342 1.0kb upstream 1.0kb upstream 4703 true Chr09: 6462995-6467697 Eucalyptus grandis
Eucgr.I00342 1.0kb upstream 1.0kb upstream 1000 false Chr09: 6462995-6463994 Eucalyptus grandis
Eucgr.I00342 1.0kb downstream 1.0kb downstream 4703 true Chr09: 6463995-6468697 Eucalyptus grandis
Eucgr.I00342 1.0kb downstream 1.0kb downstream 1000 false Chr09: 6467698-6468697 Eucalyptus grandis
Eucgr.I00342 2.0kb upstream 2.0kb upstream 5703 true Chr09: 6461995-6467697 Eucalyptus grandis
Eucgr.I00342 2.0kb upstream 2.0kb upstream 2000 false Chr09: 6461995-6463994 Eucalyptus grandis
Eucgr.I00342 2.0kb downstream 2.0kb downstream 5703 true Chr09: 6463995-6469697 Eucalyptus grandis
Eucgr.I00342 2.0kb downstream 2.0kb downstream 2000 false Chr09: 6467698-6469697 Eucalyptus grandis
Eucgr.I00342 5.0kb upstream 5.0kb upstream 8703 true Chr09: 6458995-6467697 Eucalyptus grandis
Eucgr.I00342 5.0kb upstream 5.0kb upstream 5000 false Chr09: 6458995-6463994 Eucalyptus grandis
Eucgr.I00342 5.0kb downstream 5.0kb downstream 8703 true Chr09: 6463995-6472697 Eucalyptus grandis
Eucgr.I00342 5.0kb downstream 5.0kb downstream 5000 false Chr09: 6467698-6472697 Eucalyptus grandis
Eucgr.I00342 10.0kb upstream 10.0kb upstream 13703 true Chr09: 6453995-6467697 Eucalyptus grandis
Eucgr.I00342 10.0kb upstream 10.0kb upstream 10000 false Chr09: 6453995-6463994 Eucalyptus grandis
Eucgr.I00342 10.0kb downstream 10.0kb downstream 13703 true Chr09: 6463995-6477697 Eucalyptus grandis
Eucgr.I00342 10.0kb downstream 10.0kb downstream 10000 false Chr09: 6467698-6477697 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124065568 5270 Rosid View MSA
123738247 5271 Pentapetalae View MSA
122787727 5272 Eudicot View MSA
122046290 5273 Angiosperm View MSA
121345474 5274 Embryophyte View MSA
123380225 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.323188 0.0 1.04605 Low  
cufflinks 0.486584 0.0 1.48643 Low  
cufflinks 0.471534 0.0 1.44842    
cufflinks 0.157211 0.0 0.555178 Low Low
cufflinks 0.709056 0.0 2.07556 Low  
cufflinks 0.682674 0.0 2.02752 Low  

0 Strain