Gene : Eucgr.I01229 E. grandis v2.0
Defline:  (1 of 1) PTHR12970 - TUMOR NECROSIS FACTOR SUPERFAMILY, MEMBER 5-INDUCED PROTEIN 1 CLAST3 Genomic Order:  974
Name:  ? Eucgr.I01229 Secondary Identifier:  ? PAC:32065266
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.I01229 0.5kb upstream 0.5kb upstream 4649 true Chr09: 23137118-23141766 Eucalyptus grandis
Eucgr.I01229 0.5kb upstream 0.5kb upstream 500 false Chr09: 23137118-23137617 Eucalyptus grandis
Eucgr.I01229 0.5kb downstream 0.5kb downstream 4649 true Chr09: 23137618-23142266 Eucalyptus grandis
Eucgr.I01229 0.5kb downstream 0.5kb downstream 500 false Chr09: 23141767-23142266 Eucalyptus grandis
Eucgr.I01229 1.0kb upstream 1.0kb upstream 5149 true Chr09: 23136618-23141766 Eucalyptus grandis
Eucgr.I01229 1.0kb upstream 1.0kb upstream 1000 false Chr09: 23136618-23137617 Eucalyptus grandis
Eucgr.I01229 1.0kb downstream 1.0kb downstream 5149 true Chr09: 23137618-23142766 Eucalyptus grandis
Eucgr.I01229 1.0kb downstream 1.0kb downstream 1000 false Chr09: 23141767-23142766 Eucalyptus grandis
Eucgr.I01229 2.0kb upstream 2.0kb upstream 6149 true Chr09: 23135618-23141766 Eucalyptus grandis
Eucgr.I01229 2.0kb upstream 2.0kb upstream 2000 false Chr09: 23135618-23137617 Eucalyptus grandis
Eucgr.I01229 2.0kb downstream 2.0kb downstream 6149 true Chr09: 23137618-23143766 Eucalyptus grandis
Eucgr.I01229 2.0kb downstream 2.0kb downstream 2000 false Chr09: 23141767-23143766 Eucalyptus grandis
Eucgr.I01229 5.0kb upstream 5.0kb upstream 9149 true Chr09: 23132618-23141766 Eucalyptus grandis
Eucgr.I01229 5.0kb upstream 5.0kb upstream 5000 false Chr09: 23132618-23137617 Eucalyptus grandis
Eucgr.I01229 5.0kb downstream 5.0kb downstream 9149 true Chr09: 23137618-23146766 Eucalyptus grandis
Eucgr.I01229 5.0kb downstream 5.0kb downstream 5000 false Chr09: 23141767-23146766 Eucalyptus grandis
Eucgr.I01229 10.0kb upstream 10.0kb upstream 14149 true Chr09: 23127618-23141766 Eucalyptus grandis
Eucgr.I01229 10.0kb upstream 10.0kb upstream 10000 false Chr09: 23127618-23137617 Eucalyptus grandis
Eucgr.I01229 10.0kb downstream 10.0kb downstream 14149 true Chr09: 23137618-23151766 Eucalyptus grandis
Eucgr.I01229 10.0kb downstream 10.0kb downstream 10000 false Chr09: 23141767-23151766 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124073365 5270 Rosid View MSA
123738870 5271 Pentapetalae View MSA
122790398 5272 Eudicot View MSA
122043036 5273 Angiosperm View MSA
121344362 5274 Embryophyte View MSA
123425402 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 37.6685 0.0 85.5792 High  
cufflinks 65.0099 0.0 148.777 High  
cufflinks 39.5461 0.0 89.1129 High  
cufflinks 72.214 0.0 165.2 High  
cufflinks 98.107 0.0 227.633 High High
cufflinks 19.8625 0.0 46.1517   Low

0 Strain