Gene : Eucgr.I01083 E. grandis v2.0
Defline:  (1 of 9) PF13041//PF13812 - PPR repeat family (PPR_2) // Pentatricopeptide repeat domain (PPR_3) Genomic Order:  847
Name:  ? Eucgr.I01083 Secondary Identifier:  ? PAC:32062801
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.I01083 0.5kb upstream 0.5kb upstream 2981 true Chr09: 21712252-21715232 Eucalyptus grandis
Eucgr.I01083 0.5kb upstream 0.5kb upstream 500 false Chr09: 21714733-21715232 Eucalyptus grandis
Eucgr.I01083 0.5kb downstream 0.5kb downstream 2981 true Chr09: 21711752-21714732 Eucalyptus grandis
Eucgr.I01083 0.5kb downstream 0.5kb downstream 500 false Chr09: 21711752-21712251 Eucalyptus grandis
Eucgr.I01083 1.0kb upstream 1.0kb upstream 3481 true Chr09: 21712252-21715732 Eucalyptus grandis
Eucgr.I01083 1.0kb upstream 1.0kb upstream 1000 false Chr09: 21714733-21715732 Eucalyptus grandis
Eucgr.I01083 1.0kb downstream 1.0kb downstream 3481 true Chr09: 21711252-21714732 Eucalyptus grandis
Eucgr.I01083 1.0kb downstream 1.0kb downstream 1000 false Chr09: 21711252-21712251 Eucalyptus grandis
Eucgr.I01083 2.0kb upstream 2.0kb upstream 4481 true Chr09: 21712252-21716732 Eucalyptus grandis
Eucgr.I01083 2.0kb upstream 2.0kb upstream 2000 false Chr09: 21714733-21716732 Eucalyptus grandis
Eucgr.I01083 2.0kb downstream 2.0kb downstream 4481 true Chr09: 21710252-21714732 Eucalyptus grandis
Eucgr.I01083 2.0kb downstream 2.0kb downstream 2000 false Chr09: 21710252-21712251 Eucalyptus grandis
Eucgr.I01083 5.0kb upstream 5.0kb upstream 7481 true Chr09: 21712252-21719732 Eucalyptus grandis
Eucgr.I01083 5.0kb upstream 5.0kb upstream 5000 false Chr09: 21714733-21719732 Eucalyptus grandis
Eucgr.I01083 5.0kb downstream 5.0kb downstream 7481 true Chr09: 21707252-21714732 Eucalyptus grandis
Eucgr.I01083 5.0kb downstream 5.0kb downstream 5000 false Chr09: 21707252-21712251 Eucalyptus grandis
Eucgr.I01083 10.0kb upstream 10.0kb upstream 12481 true Chr09: 21712252-21724732 Eucalyptus grandis
Eucgr.I01083 10.0kb upstream 10.0kb upstream 10000 false Chr09: 21714733-21724732 Eucalyptus grandis
Eucgr.I01083 10.0kb downstream 10.0kb downstream 12481 true Chr09: 21702252-21714732 Eucalyptus grandis
Eucgr.I01083 10.0kb downstream 10.0kb downstream 10000 false Chr09: 21702252-21712251 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124063650 5270 Rosid View MSA
123744413 5271 Pentapetalae View MSA
122789799 5272 Eudicot View MSA
122051295 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121349652 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.40152 0.0 6.08686    
cufflinks 2.46966 0.0 6.20332    
cufflinks 2.13128 0.0 5.44262    
cufflinks 1.32477 0.0 3.52688   Low
cufflinks 2.28169 0.0 5.79901    
cufflinks 6.70931 0.0 15.5087   High

0 Strain